The Mathematical Institute, University of Oxford, Eprints Archive

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Number of items: 73.

Cotter, S L and Vejchodsky, T. and Erban, R. (2013) Adaptive finite element method assisted by stochastic simulation of chemical systems. Siam Journal on Scientific Computing, 35 (1). B107-B131.

Alber, M and Maini, P. K. and Niebur, G (2013) Biomedical modeling: the role of transport and mechanics. Bulletin of Mathematical Biology, 75 (8). pp. 1233-1237. ISSN 0092-8240

Schroll, R. D. and Adda-Bedia, M. and Cerda, E. and Huang, J. and Menon, N. and Russell, T. P. and Toga, K. B. and Vella, D. and Davidovitch, B. (2013) Capillary deformations of bendable films. Physical Review Letters . (Submitted)

Mirams, G R and Arthurs, C J and Bernabeu, M O and Bordas, R and Cooper, J and Corrias, A and Davit, Y. and Dunn, S J and Fletcher, A G and Harvey, D G and Marsh, M E and Osborne, J M and Pathmanathan, P. and Pitt-Francis, J and Southern, J. and Zemzemi, N and Gavaghan, D J (2013) Chaste: an open source C++ library for computational physiology and biology. PLOS Computational Biology, 9 . e1002970.

Thiyagalingam, J. and Walton, S. and Duffy, B.R. and Trefethen, A. and Chen, M. (2013) Complexity plots. EuroVis . (Submitted)

Kelly, S and Maini, P. K. (2013) DendroBlast: approximate phylogenetic trees in the absence of multiple sequence alignments. Plos One, 8 (3). e58537-(11 pages).

Bowden, L and Simpson, M J and Baker, R. E. (2013) Design and interpretation of cell trajectory assays. Journal of the Royal Society Interface, 10 (88). pp. 1742-1755.

Bruna, M. and Chapman, S. J. (2013) Diffusion of finite-size particles in confined geometries. Bulletin of Mathematical Biology . (Submitted)

Flegg, M. B. and Rudiger, S and Erban, R. (2013) Diffusive spatio-temporal noise in a first-passage time model for intracellular calcium release. Journal of Chemical Physics, 138 (15). p. 154103.

Marston, J. O. and Sprittles, J. E. and Zhu, Y. and Li, E. Q. and Vakarelski, I. U. and Thoroddsen, S. T. (2013) Drop spreading and penetration into pre-wetted powders. Journal of Powder Technology . (Submitted)

Mantzaris, A V and Bassett, D S and Wymbs, N F and Estrada, E and Porter, M A and Mucha, P J and Grafton, S T (2013) Dynamic network centrality summarizes learning in the human brain. Journal of Complex Networks, 1 (1). pp. 83-92.

Moulton, D E and Lega, J (2013) Effect of disjoining in a thin film equation with non-uniform forcing. European Journal of Applied Mathematics, 24 (6). pp. 887-920.

Knoche, S. and Vella, D. and Aumaitre, E. and Degen, P. and Rehage, H. and Cicuta, P. and Kierfeld, J. (2013) Elastometry of deflated capsules elastic moduli from shape and wrinkle analysis. Physical Review Letters . (Submitted)

Britton, O.J. and Bueno-Orovio, A. and van Ammel, K. and Lu, H.R. and Towart, R. and Gallacher, D.J. and Rodriguez, B. (2013) Experimentally-calibrated population of models predicts and explains inter-subject variability in cardiac cellular
electrophysiology.
PNAS . (Submitted)

Bueno-Orovio, A. and Kay, D. and Grau, V. and Rodriguez, B. and Burrage, K. (2013) Fractional diffusion models of cardiac electrical propagation: role of structural heterogeneity in dispersion of repolarization. Nature Communications . (Submitted)

Schlackow, M and Marguerat, S and Proudfoot, N and Bahler, J and Erban, R. and Gullerova, M (2013) Genome-wide analysis of poly(A) site selection in schizosaccharomyces pombe,. RNA, 19 . pp. 1-15.

O'Keeffe, S.G. and Moulton, D.E. and Waters, S.L. and Goriely, A. (2013) Growth-induced axial buckling of a slender elastic filament embedded in an isotropic elastic matrix. International Journal of Nonlinear Mechanics . (Submitted)

O'Keeffe, S.G. and Moulton, D. E. and Waters, S. L. and Goriely, A. (2013) Growth-induced axial buckling of a slender elastic filament embedded in an isotropic elastic matrix. International Journal of Nonlinear Mechanics, 56 . pp. 94-104.

Fletcher, A G and Osborne, J. M. and Maini, P. K. and Gavaghan, D. J. (2013) Implementing vertex dynamics models of cell populations in biology within a consistent computational framework. Progress in Biophysics and Molecular Biology, 113 . pp. 299-326.

Markham, D C and Simpson, M J and Maini, P. K. and Gaffney, E. A. and Baker, R. E. (2013) Incorporating spatial correlations into multispecies mean-field models. Physical Review E, 88 . 052713-(9 pages).

Kefala, M and Papageorgiou, S G and Kontos, C K and Economopoulou, P and Tsanas, A and Panayiotides, I G and Gorgoulis, V G and Patsouris, E and Foukas, P G (2013) Increased expression of phosphorrylated NBS1, a key molecule of the DNA damage response machinery, is an adverse prognostic factor in patients with de novo myelodysplastic syndromes. Leukemia Research, 37 (11). pp. 1576-1582.

Tsai, S.S.H. and Griffiths, I.M. and Li, Z. and Kim, P. and Stone, H.A. (2013) Interfacial deflection and jetting of a paramagnetic particle-laden fluid: theory and experiment. Soft Matter . (Submitted)

Carvalho, G D and Miranda, J A and Gadelha, H (2013) Interfacial elastic fingering in Hele-Shaw cells: a weakly nonlinear study. Physical Review E, 88 (5). 053006.

Yates, C A and Baker, R E (2013) Isotropic model for cluster growth on a regular lattice. Physical Review E, 88 (2). 023304.

Monoyios, Michael (2013) Malliavin calculus method for asymptotic expansion of dual control problems. SIAM Journal on Financial Mathematics, 4 . pp. 884-915.

Sotiris, A. and Prokopiou, S. A. and Byrne, H. M. and Jeffrey, M. R. and Robinson, R. S. and Mann, G. E. and Owen, M. R. (2013) Mathematical analysis of a model for the growth of the bovine corpus luteum. Journal of Mathematical Biology . (Submitted)

Chirat, R. and Moulton, D. E. and Goriely, A. (2013) Mechanical basis of morphogenesis and convergent evolution of spiny seashells. Proceedings of the National Academy of Sciences, 110 (15). pp. 6015-6020. ISSN 1091-6490

Vincent, J P and Fletcher, A G and Baena-Lopez, L A (2013) Mechanisms and mechanics of cell competition in epithelia. Nature Review Molecular Cellular Biology, 14 (9). pp. 581-591.

Zubkov, V S and Breward, C J W and Gaffney, E A (2013) Meniscal fluid dynamics near Marx's line. Bulletin of Mathematical Biology, 75 (9). pp. 1524-1543. ISSN n/a

Zhu, S.-X. and Gu, T.-X. and Liu, X.-P. (2013) Minimizing synchronizations in sparse iterative solvers for distributed supercomputers. Computer & Mathematics with Applications . (Submitted)

Belmonte-Beitia, J and Woolley, T. E. and Scott, J G and Maini, P. K. and Gaffney, E. A. (2013) Modelling biological invasions: individual to population scales at interfaces. Journal of Theoretical Biology, 334 . pp. 1-12.

Murray, P J and Maini, P. K. and Baker, R. E. (2013) Modelling delta-notch perturbations during zebrafish somitogenesis. Developmental Biology, 373 (2). pp. 407-421.

Franz, B. and Flegg, M. B. and Chapman, S. J. and Erban, R. (2013) Multiscale reaction-diffusiion algorithms: PDE-assisted Brownian dynamics. SIAM Journal of Applied Mathematics, 73 (3). pp. 1224-1247.

Bueno-Orovio, A. and Sánchez, C. and Pueyo, E. and Rodriguez, B. (2013) Na/K pump regulation of cardiac repolarization: Insights from a systems biology approach. European Journal of Physiology . (Submitted)

Lai, Y M and Porter, M A (2013) Noise-induced synchronization desychronization and clustering in globally coupled nonidentical oscillators. Physical Review E, 88 (1). 012905.

Schumacher, L J and Woolley, T E and Baker, R E (2013) Noise-induced temporal dynamics in Turing systems. Physical Review E, 87 (4). 042719.

Rosser, G and Fletcher, A G and Wilkinson, D A and de Beyer, J A and Yates, C A and Armitage, J P and Maini, P. K. and Baker, R. E. (2013) Novel methods for analysing bacterial tracks reveal persistence in rhodobacter sphaeroides. PLOs Computational Biology, 9 (10). e1003276-(18 pages).

Kimpton, L.S. and Whiteley, J.P. and Waters, S.L. and Oliver, J.M. (2013) On a poroviscoelastic model for cell crawling. Journal of Mathematical Biology . (Submitted)

Heath-Brown, D. R. and Bui, H.M. (2013) On simple zeros of the Riemann zeta-function. Bull. London Math. Soc., 45 . pp. 953-961.

Pestana, J. (2013) On the eigenvalues and eigenvectors of nonsymmetric saddle point matrices preconditioned by block triangular matrices. SIAM Journal on Matrix Analysis and Applications . (Submitted)

Holland, M. A. and Kosmata, T. and Goriely, A. and Kuhl, E. (2013) On the mechanics of thin films and growing surfaces. Mathematics and Mechanics of Solids . (Submitted)

Gadelha, H (2013) On the optimal shape of magnetic swimmers. Regular and Chaotic Dynamics, 18 (1-2). pp. 75-84.

Lee, S Seirin and Baker, R E and Gaffney, E. A. and White, S M (2013) Optimal barrier zones for stopping the invasion of Aedes aegypti mosquitoes via transgenic or sterile insect techniques. Journal of Theoretical Ecology, 6 (4). pp. 427-442.

Seirin Lee, S and Baker, R E and Gaffney, E. A. and White, S M (2013) Optimal strategies for Aedes aegypti mosquito control via transgenic and sterile insect techniques: endemics and emerging outbreaks. Journal of Theoretical Biology, 331 (1). pp. 78-90.

Paterson, C. and Wilson, S. K. and Duffy, B. R. (2013) Pinning, de-pinning and re-pinning of a slowly varying rivulet. European Journal of Mechanics B/Fluids . (Submitted)

Knox, D. J. and Wilson, S. K. and Duffy, B. R. and McKee, S. (2013) Porous squeeze-film flow. IMA Journal of Applied Mathematics . (Submitted)

Heath-Brown, D. R. (2013) Power-free values of polynomials. Quart J Math Oxford Ser (2), 64 . pp. 177-188.

Farrell, P. and Wendland, H. (2013) RBF multiscale collocation for second order elliptic boundary value problems. SIAM Journal on Numerical Analysis . (Submitted)

Yates, C A and Klingbeil, G. (2013) Recycling random numbers in the stochastic simulation algorithm. Journal of Chemical Physics, 138 (9). 094103.

Paterson, C. and Wilson, S.K. and Duffy, B.R. (2013) Rivulet flow round a horizontal cylinder subject to a
uniform surface shear stress.
Quarterly Journal of Mechanics and Applied Mathematics . (Submitted)

Bassett, D S and Porter, M A and Wymbs, N F and Grafton, S T and Carlson, J M and Mucha, P J (2013) Robust detection of dynamic community structure in networks. Chaos, 23 (1). 013142.

Goriely, A. and Tabor, M. (2013) Rotation, inversion, and perversion in anisotropic elastic cylindrical tubes and membranes. Proceedings of The Royal Society A . (Submitted)

Neukirch, S. and Goriely, A. and Olivier, T. (2013) Singular inextensible limit in the vibrations of post-buckled rods: analytical derivation and role of boundary conditions. Journal of Sound and Vibration . (Submitted)

Ketcheson, D. I. and Macdonald, C. B. and Ruuth, S. J. (2013) Spatially partitioned embedded Runge-Kutta Methods. SIAM Journal on Numerical Analysis . (Submitted)

Ishimoto, K and Gaffney, E A (2013) Squirmer dynamics near a boundary. Physical Review E, 88 (6). 062702.

Wagner, T. J. W. and Vella, D. (2013) Switch on, switch off: stiction in nanoelectromechanical switches. Nanotechnology . (Submitted)

Lever, M and Dushek, O and van der Merwe, A and Lim, H-S and Maini, P. K. (2013) Systems biology of T-cell signalling. Immunology, 140 (1). p. 210.

Mukhopadhyay, H and Cordoba, S P and Maini, P. K. and van der Merwe, A and Dushek, O (2013) Systems model of T cell receptor proximal signaling reveals emergent ultrasensitivity. PLOS Computational Biology, 9 (3). e1003004-8 pages.

Bassett, D S and Wymbs, N F and Rombach, M P and Porter, M A and Mucha, P J and Grafton, S T (2013) Task-based core-periphery organization of human brain dynamics. PLOS Computational Biology, 9 (9). e1003171.

Lloyd-Lewis, B and Fletcher, A G and Dale, T C and Byrne, H M (2013) Toward a quantitative understanding of the Wnt/beta-catenin pathway through simulation and experiment. Wires Systems Biology and Medicine, 5 (4). pp. 391-407.

Kursawe, J and Schulz, J and Metzler, R (2013) Transient aging in fractional Brownian and Langevin-equation motion. Physical Review E, 88 . 062124.

Yatim, Y. M. and Duffy, B. R. and Wilson, S. K. (2013) Travelling-wave similarity solutions for a steadily translating slender dry patch in a thin fluid film. Physics of Fluids . (Submitted)

Maclaren, O J and Sneyd, J. S. and Crampin, E J (2013) What do aquaporin knockout studies tell us about fluid transport in epithelia? Journal of Membrane Biology, 246 (4). pp. 297-305.

Gadelha, H and Gaffney, E. A. and Goriely, A. (2013) The counterbend phenomenon in flagellar axonemes and cross-linked filament bundles. PNAS, 110 (30). pp. 12180-12185.

Herterich, J.G. and Griffiths, I.M. and Field, R.W. and Vella, D. (2013) The effect of a concentration-dependent viscosity on
particle transport in a channel flow with porous walls.
AIChE Journal . (Submitted)

Rosser, G and Fletcher, A G and Maini, P. K. and Baker, R. E. (2013) The effect of sampling rate on observed statistics in a correlated random walk. The Journal of the Royal Society Interface, 10 (83). pp. 1742-5662.

Yates, C A and Baker, R. E. (2013) The importance of the Voronoi domain partition for position-jump reaction-diffusion processes on non-uniform rectilinear lattices. Physical Review E, 88 (5). 05471.

Allen, R. and Reis, T. (2013) A lattice Boltzmann model for natural convection in cavities. International Journal of Heat and Fluid Flow . (Submitted)

Vaughan, JR., B. and Baker, R. E. and Kay, D. and Maini, P. K. (2013) A modified Oster-Murray-Harris mechanical model of morphogenesis. Siam Journal of Applied Mathematics, 73 (6). pp. 2124-2142.

Heath-Brown, D. R. (2013) $p$-adic Zeros of Systems of Quadratic Forms. Contemporary Mathematics, 587 . pp. 131-139.

Cotter, S. L. and Klika, V. and Kimpton, L.S. and Collins, S.L and Heazell, A. E. P. (2013) A stochastic model for early placental development. Journal of the Royal Society Interface . (Submitted)

Curtis, M P and Gaffney, E A (2013) The three sphere swimmer in a nonlinear viscoelastic medium. Physical Review E, 87 (4). 043006.

März, T. (2013) A well-posedness framework for inpainting based on coherence transport. Foundations of Computational Mathematics . (Submitted)

This list was generated on Fri Nov 24 12:12:22 2017 GMT.