The Mathematical Institute, University of Oxford, Eprints Archive

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Number of items: 74.

Rees, Tyrone and Stoll, Martin and Wathen, A. J. (2009) All-at-once preconditioning in PDE-constrained optimization. Not specified . (Submitted)

Erban, R. and Chapman, S. J. and Kevrekidis, I. G. and Vejchodsky, T. (2009) Analysis of a stochastic chemical system close to a sniper bifurcation of its mean field model. Not specified . (Submitted)

Owen, M. R. and Alarcon, T. and Maini, P. K. and Byrne, H. M. (2009) Angiogenesis and vascular remodelling in normal and cancerous tissues. Journal of Mathematical Biology, 58 (4-5). pp. 689-721.

Smith, D J and Gaffney, E. A. and Gadelha, H and Kapur, N and Kirkman-Brown, J C (2009) Bend propagation in the flagella of migrating human sperm. Cell Motility & the Cytoskeleton, 66 (4). pp. 220-336.

Stoll, Martin and Rees, Tyrone (2009) Block triangular preconditioners for PDE constrained
optimization.
Not specified . (Submitted)

Finka, Martin and Niederer, Steven A. and Cherry, Elizabeth M. and Fenton, Flavio H. and Koivumki, Fenton, Jussi T. and Seemann, Gunnar and Thul, R¨udiger and Zhang, Henggui and Sachse, Frank B. and Crampin, Edmund J. and Smith, Nicolas P. and Beard, Dan (2009) Cardiac cell modelling: Observations from the heart of the cardiac physiome project. Cardiac cell modelling: Observations from the heart of the cardiac physiome project . (Submitted)

Derfel, G and van Brunt, B and Wake, Graeme (2009) A Cell Growth Model Revisited. Not specified . (Submitted)

Pitt-Francis, J and Pathmanathan, P. and Bernabeu, M O and Bordas, R and Cooper, J and Fletcher, A G and Mirams, G R and Murray, P J and Osbourne, J and Walter, A and Chapman, S. J. and Garny, A. and van Leeuwen, I. M. M. and Maini, P. K. and Rodriguez, B and Waters, S. L. and Whiteley, J. P. and Byrne, H. M. and Gavaghan, D. J. (2009) Chaste: a test-driven approach to software development for biological modelling. Computer Physics Communications, 180 (12). pp. 2452-2471.

Pitt-Francis, J and Pathmanathan, P. and Bernabeu, M O and Bordas, R and Cooper, J and Fletcher, A G and Mirams, G R and Murray, P J and Osbourne, J and Walter, A and Chapman, S. J. and Garny, A. and van Leeuwen, I. M. M. and Maini, P. K. and Rodriguez, B and Whiteley, J. P. and Byrne, H. M. and Gavaghan, D. J. (2009) Chaste: a test-driven approach to software development for physiological modelling. Not specified . (Submitted)

Pathmanathan, P. and Whiteley, J. P. and Gavaghan, D. J. (2009) A Comparison of Numerical Methods used for
Finite Element Modelling of Soft Tissue
Deformation.
Not specified . (Submitted)

Heath-Brown, D. R. (2009) Convexity bounds for $L$-functions. Acta Arithmetica, 136 . pp. 391-395.

Flynn, E. V. and Wunderle, J. (2009) Cycles of Covers. Monatsh. Math., 157 . pp. 217-232. ISSN 0026-9255

Singer, A and Erban, R. and Kevrekidis, I. G. and Coifman, R (2009) Detecting intrinsic slow variables in stochastic dynamical systems by anisotropic diffusion maps. Proceedings of the National Academy of Sciences, 106 (38). pp. 16090-16095. ISSN 1091-6490

Peppin, Stephen S. L. (2009) Diffusion and permeation in binary solutions: Application to
protein ultrafiltration.
Not specified . (Submitted)

Cominetti, Ornella and Matzavinos, Anastasios and Samarasinghe, Sandhya and Kulasiri, Don and Maini, Philip K. and Liu,, Sijia and Erban, Radek (2009) DifFUZZY: A fuzzy spectral clustering algorithm for complex data sets. International Journal of Computational Intelligence in Bioinformatics and Systems Biology . (Submitted)

Nicolau jr, D. V. and Armitage, J. P. and Maini, P. K. (2009) Directional persistence & the optimality of run-and-tumble chemotaxis. Computational Biology and Chemistry, 33 (4). pp. 269-274.

Aydemir, E and Breward, C. J. W. and Witelski, T P (2009) The effect of polar lipids on tear film dynamics. Not specified . (Submitted)

Majumdar, Apala (2009) Equilibrium order parameters of nematic liquid
crystals in the Landau-De Gennes theory.
Not specified . (Submitted)

Fornberg, B. (2009) A finite difference method for free boundary problems. Not specified . (Submitted)

Murray, P J and Edwards, C. M. and Tindall, M. J. and Maini, P. K. (2009) From a discrete to a continuum model of cell dynamics in one dimension. Physical Review E, 80 (3). 031912-1.

Xue, Chuan and Othmer, H. G. and Erban, R. (2009) From Individual to Collective Behavior of Unicellular Organisms: Recent Results and Open Problems. Not specified . (Submitted)

Baker, Ruth E. and Yates, C. A. and Erban, R. (2009) From microscopic to macroscopic descriptions of cell
migration on growing domains.
Not specified . (Submitted)

Wake, Graeme and Begg, R E (2009) Functional differential equations arising in cell-growth. Not specified . (Submitted)

Benner, Peter and Fassbender, Heike and Stoll, Martin (2009) A Hamiltonian Krylov-Schur-type method based on the
symplectic Lanczos process.
Not specified . (Submitted)

Benner, Peter and Fassbender, Heike and Stoll, Martin (2009) A Hamiltonian Krylov-Schur-type method based on the symplectic Lanczos process. Not specified . (Submitted)

Rao, Arni S.R. Srinivasa and Thomas, K. and Sudhakar, K. and Maini, P. K. (2009) HIV/Aids epidemic in India and predicting the impact of the national response: mathematical modeling and analysis. Mathematical Biosciences & Engineerig, 6 . pp. 779-813.

Flynn, E. V. (2009) Homogeneous Spaces and Degree 4 del Pezzo Surfaces. Manuscripta Mathematica, 129 . pp. 369-380. ISSN 0025-2611

Pani, A. K. and Yadav, S (2009) An hp-Local Discontinuous Galerkin method for Parabolic
Integro-Differential Equations.
Not specified . (Submitted)

Smith, D J and Gaffney, E. A. and Blake, J R and Kirkman-Brown, J C (2009) Human sperm accumulation near surfaces: a simulation study. Journal of Fluid Mechanics, 621 (4). pp. 289-320.

Wright, Grady B. and Flyer, Natasha (2009) A Hybrid Radial Basis Function - Pseudospectral Method for Thermal Convection in a 3-D Spherical Shell. A Hybrid Radial Basis Function - Pseudospectral Method for Thermal Convection in a 3-D Spherical Shell . (Submitted)

Yates, C. A. and Erban, R. and Escudero, C. and Couzin, I. D. and Buhl, J. and Kevrekidis, I. G. and Maini, P. K. and Sumpter, D. J. T. (2009) Inherent noise can facilitate coherence in collective swarm motion. Not specified . (Submitted)

Yates, C. A. and Erban, R. and Escudero, C. and Couzin, I. D. and Buhl, J. and Kevrekidis, I. G. and Maini, P. K. and Sumpter, D. J. T. (2009) Inherent noise can facilitate coherence in collective swarm motion. PNAS, 106 (14). pp. 5464-5469.

van Leeuwen, I. M. M. and Mirams, G R and Walter, A and Fletcher, A G and Murray, P J and Osbourne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation, 42 (5). pp. 617-636.

Leeuwen, I M M and Mirams, G R and Walter, A and Fletcher, A and Murray, P J and Osborne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation .

Majumdar, Apala and Zarnescu, Arghir (2009) Landau-De Gennes theory of nematic liquid
crystals: the Oseen-Frank limit and beyond.
Not specified . (Submitted)

Stewart, Peter S and Waters, Sarah L and Jensen, Oliver E (2009) Local and global instabilities of flow in a flexible-walled channel. European Journal of Mechanics B/Fluids .

Green, J E F and Waters, S. L. and Shakesheff, K M and Byrne, H. M. (2009) A Mathematical Model of Liver Cell Aggregation In Vitro. Bulletin of Mathematical Biology .

Smith, D J and Gaffney, E. A. and Blake, J R (2009) Mathematical modelling of cilia driven transport of biological fluids. Proceedings of Royal Society of London A, 465 (2108). pp. 2417-2439. ISSN 2006-1751

Whittaker, Robert J and Booth, Richard and Dyson, Rosemary and Bailey, Clare and Chini, Louise Parsons and Naire, Shailesh and Payvandi, Sevil and Rong, Zimei and Woollard, Hannah and Cummings, Linda J and Waters, Sarah L and Mawasse, Lina and Chaudhuri, Julian B and Ellis, Marianne J and Michael, Vipin and Kuiper, Nicola J and Cartmell, Sarah (2009) Mathematical modelling of fibre-enhanced perfusion inside
a tissue-engineering bioreactor.
Journal of Theoretical Biology .

Lemon, Greg and Howard, Daniel and Tomlinson, Matthew J and Buttery, Lee D and Rose, Felicity R A J and Waters, Sarah L and King, John R (2009) Mathematical modelling of tissue-engineering angiogenesis. Mathematical Biosciences .

Daugherty, D and Roque-Urrea, T and Urrea-Roque, J and Troyer, J and Wirkus, S and Porter, M A (2009) Mathematical models of bipolar disorder. Communications in Nonlinear Science and Numerical Simulations, 14 (7). pp. 2897-2908.

Tran, Kenneth and Smith, Nic and Loiselle, Denis and Crampin, E. J. (2009) A metabolite-sensitive, thermodynamically-constrained model of
cardiac cross-bridge cycling: Implications for force development during ischemia.
Not Specified . (Submitted)

Roberts, M.A.J. and August, E. and Hamadeh, A. and Maini, P. K. and McSharry, P. E. and Armitage, J. P. and Papachristodoulou, A. (2009) A model invalidation-based approach for elucidating biological signalling pathways, applied to the chemotaxis pathway inR. sphaeroides. BMC Systems Biology, 3 (3). pp. 1-14.

Whiteley, J. P. (2009) Model reduction using a posteriori analysis. Not specified . (Submitted)

Barrio, R. A. and Baker, Ruth E. and Vaughan, JR., B. and Tribuzy, K. and de Carvalho, M. R. and Bassanezi, R. and Maini, P. K. (2009) Modeling the skin pattern of fishes. Physical Review E, 79 (3). 031908-1-031908-11.

Monro, H C and Gaffney, E. A. (2009) Modelling chemotherapy resistance in palliation and failed cure. Journal of Theoretical Biology, 257 (2). pp. 292-302.

Band, L. R. and Cummings, L. J. and Waters, S. L. and Wattis, J A D (2009) Modelling crystal aggregation and deposition
in the catheterised lower urinary tract.
Mathematical Biology .

Peppin, S. S. L. and Majumdar, A. and Wettlaufer, J. S. (2009) Morphological instability of a nonequilibrium icecolloid interface. Not specified . (Submitted)

Peppin, S. S. L. and Majumdar, A. and Wettlaufer, J. S. (2009) Morphological instability of a nonequilibrium icecolloid interface. Not specified . (Submitted)

Ball, J. M. and Majumdar, Apala (2009) Nematic liquid crystals : from Maier-Saupe to a continuum theory. Not specified . (Submitted)

Arnth-Jensen, A. and Flynn, E. V. (2009) Nontrivial Sha in the Jacobian of an Infinite Family of Curves of Genus 2. Journal de Théorie des Nombres de Bordeaux, 21 . pp. 1-13. ISSN 1246-7405

Zygalakis, K. C. (2009) On the existence and the applications of
modified equations for stochastic differential
equations.
Not specified . (Submitted)

Peppin, S. S. L. and Spannuth, M. J. and Wettlaufer, J. S. (2009) Onsager reciprocity in premelting solids. Not specified . (Submitted)

Goswami, Deepjyoti and Pani, A. K. and Yadav, S (2009) Optimal L2 estimates for semidiscrete Galerkin methods for
parabolic integro-differential equations with nonsmooth data.
Not Specified . (Submitted)

Goswami, Deepjyoti and Pani, A. K. (2009) Optimal L2-error estimates for the semidiscrete Galerkin
approximation to a second order linear parabolic initial and
boundary value problem with nonsmooth initial data.
Not Specified . (Submitted)

Charpin, J. P. F. and Kobo, N S and Legodi, K and Makinde , OD and Ngnotchouye, J-M T and Ockendon, H. and Owinoh, A Z and Peppin, Stephen S. L. and Whiteley, J. P. (2009) Pebble bed: reflector treatment and pressure
velocity coupling.
Study group report . (Unpublished)

Stoll, Martin and Wathen, A. J. (2009) Preconditioning for active set and projected gradient methods as
semi-smooth Newton methods for PDE-constrained optimization
with control constraints.
Not specified . (Submitted)

Bron, A J and Yokoi, N and Gaffney, E. A. and Tiffany , J M (2009) Predicted phenotypes of dry eye - proposed consequences of its natural history. The Ocular Surface, 7 (2). pp. 78-92.

Maini, P. K. and Baker, Ruth E. (2009) Preface, Morphogenesis issue. Mathematical Modelling of Natural Phenomena, 4 (4). pp. 1-2. ISSN N/A

Lazic, Stanley E. (2009) Pseudoreplication invalidates the results of many neuroscientific studies. Pseudoreplication invalidates the results of many neuroscientific studies . (Submitted)

Newby, J. M. and Bressloff, P. C. (2009) Quasi-steady state reduction of molecular motor-based models of directed intermittent search. Not specified . (Submitted)

Heath-Brown, D. R. and Browning, T. D. (2009) Rational points on quartic hypersurfaces. J. Reine angew. Math, 629 . pp. 37-88.

Yates, Christian A. and Baker, Ruth E. and Erban, Radek and Maini, Philip K. (2009) Refining self-propelled particle models for collective behaviour. Refining self-propelled particle models for collective behaviour . (Submitted)

Chang, C. and Wu, P. and Baker, Ruth E. and Maini, P. K. and Alibardi, L. and Chuong, C. M. (2009) Reptile scale paradigm: Evo-Devo, pattern formation and regeneration. International Journal of Developmental Biology, 53 (5/6). pp. 813-826.

Southern, James A. and Plank, Gernot and Vigmond, Edward J. and Whiteley, J. P. (2009) Solving the Coupled System Improves
Computational Efficiency of the Bidomain
Equations.
Not specified . (Submitted)

Tindall, M. J. and Porter, S. L. and Wadhams, G H and Maini, P. K. and Armitage, J. P. (2009) Spatiotemporal modelling of CheY complexes in escherichia coli chemotaxis. Progress in Biophysics Molecular Biology, 100 (1-3). pp. 40-46.

Lin, C.M and Jiang, T.X. and Baker, Ruth E. and Maini, P. K. and Widelitz, R. B. and Chunong, C.M. (2009) Spots & stripes: pleomorphic patterning of stem cells via p-ERK-depenendent cell chemotaxis shown by feather morphogenesis & mathematical simulation. Developmental Biology , 334 (2). pp. 369-382.

Erban, R. and Chapman, S. J. (2009) Stochastic modelling of reaction-diffusion processes:
algorithms for bimolecular reactions.
Not specified . (Submitted)

Bressloff, P. C. (2009) Stochastic neural field theory and the system-size expansion. Not specified . (Submitted)

Potsepaev, Roman V. and Farmer, Chris L. and Aziz, Mohammed (2009) Stochastic Partial Differential Equations as priors in ensemble methods for solving inverse problems. Stochastic Partial Differential Equations as priors in ensemble methods for solving inverse problems . (Submitted)

Heath-Brown, D. R. (2009) Sums and Differences of Three $k$-th Powers. Journal of Number Theory, 129 . pp. 1579-1594.

Majumdar, A. and Robbins, J M and Zyskin, M (2009) Tangent unit-vector fields: nonabelian homotopy invariants and the Dirichlet energy. Not specified . (Submitted)

Majumdar, A. and Robbins, J M and Zyskin, M (2009) Tangent unit-vector fields: nonabelian homotopy invariants and the Dirichlet energy. Not specified . (Submitted)

Baker, Ruth E. and Schnell, S. and Maini, P. K. (2009) Waves and patterning in developmental biology: vertebrate segmentation and feather bud formation as case studies. International Journal of Developmental Biology, 53 (5/6). pp. 783-794.

This list was generated on Sun Nov 23 01:14:49 2014 GMT.