The Mathematical Institute, University of Oxford, Eprints Archive

Items where Research Group is "Centre for Mathematical Biology" and Year is 2013

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Number of items: 46.


Alber, M and Maini, P. K. and Niebur, G (2013) Biomedical modeling: the role of transport and mechanics. Bulletin of Mathematical Biology, 75 (8). pp. 1233-1237. ISSN 0092-8240

Bassett, D S and Porter, M A and Wymbs, N F and Grafton, S T and Carlson, J M and Mucha, P J (2013) Robust detection of dynamic community structure in networks. Chaos, 23 (1). 013142.

Bassett, D S and Wymbs, N F and Rombach, M P and Porter, M A and Mucha, P J and Grafton, S T (2013) Task-based core-periphery organization of human brain dynamics. PLOS Computational Biology, 9 (9). e1003171.

Belmonte-Beitia, J and Woolley, T. E. and Scott, J G and Maini, P. K. and Gaffney, E. A. (2013) Modelling biological invasions: individual to population scales at interfaces. Journal of Theoretical Biology, 334 . pp. 1-12.

Bowden, L and Simpson, M J and Baker, R. E. (2013) Design and interpretation of cell trajectory assays. Journal of the Royal Society Interface, 10 (88). pp. 1742-1755.

Carvalho, G D and Miranda, J A and Gadelha, H (2013) Interfacial elastic fingering in Hele-Shaw cells: a weakly nonlinear study. Physical Review E, 88 (5). 053006.

Chirat, R. and Moulton, D. E. and Goriely, A. (2013) Mechanical basis of morphogenesis and convergent evolution of spiny seashells. Proceedings of the National Academy of Sciences, 110 (15). pp. 6015-6020. ISSN 1091-6490

Cotter, S L and Vejchodsky, T. and Erban, R. (2013) Adaptive finite element method assisted by stochastic simulation of chemical systems. Siam Journal on Scientific Computing, 35 (1). B107-B131.

Curtis, M P and Gaffney, E A (2013) The three sphere swimmer in a nonlinear viscoelastic medium. Physical Review E, 87 (4). 043006.

Flegg, M. B. and Rudiger, S and Erban, R. (2013) Diffusive spatio-temporal noise in a first-passage time model for intracellular calcium release. Journal of Chemical Physics, 138 (15). p. 154103.

Fletcher, A G and Osborne, J. M. and Maini, P. K. and Gavaghan, D. J. (2013) Implementing vertex dynamics models of cell populations in biology within a consistent computational framework. Progress in Biophysics and Molecular Biology, 113 . pp. 299-326.

Franz, B. and Flegg, M. B. and Chapman, S. J. and Erban, R. (2013) Multiscale reaction-diffusiion algorithms: PDE-assisted Brownian dynamics. SIAM Journal of Applied Mathematics, 73 (3). pp. 1224-1247.

Gadelha, H (2013) On the optimal shape of magnetic swimmers. Regular and Chaotic Dynamics, 18 (1-2). pp. 75-84.

Gadelha, H and Gaffney, E. A. and Goriely, A. (2013) The counterbend phenomenon in flagellar axonemes and cross-linked filament bundles. PNAS, 110 (30). pp. 12180-12185.

Ishimoto, K and Gaffney, E A (2013) Squirmer dynamics near a boundary. Physical Review E, 88 (6). 062702.

Kefala, M and Papageorgiou, S G and Kontos, C K and Economopoulou, P and Tsanas, A and Panayiotides, I G and Gorgoulis, V G and Patsouris, E and Foukas, P G (2013) Increased expression of phosphorrylated NBS1, a key molecule of the DNA damage response machinery, is an adverse prognostic factor in patients with de novo myelodysplastic syndromes. Leukemia Research, 37 (11). pp. 1576-1582.

Kelly, S and Maini, P. K. (2013) DendroBlast: approximate phylogenetic trees in the absence of multiple sequence alignments. Plos One, 8 (3). e58537-(11 pages).

Kursawe, J and Schulz, J and Metzler, R (2013) Transient aging in fractional Brownian and Langevin-equation motion. Physical Review E, 88 . 062124.

Lai, Y M and Porter, M A (2013) Noise-induced synchronization desychronization and clustering in globally coupled nonidentical oscillators. Physical Review E, 88 (1). 012905.

Lee, S Seirin and Baker, R E and Gaffney, E. A. and White, S M (2013) Optimal barrier zones for stopping the invasion of Aedes aegypti mosquitoes via transgenic or sterile insect techniques. Journal of Theoretical Ecology, 6 (4). pp. 427-442.

Lever, M and Dushek, O and van der Merwe, A and Lim, H-S and Maini, P. K. (2013) Systems biology of T-cell signalling. Immunology, 140 (1). p. 210.

Lloyd-Lewis, B and Fletcher, A G and Dale, T C and Byrne, H M (2013) Toward a quantitative understanding of the Wnt/beta-catenin pathway through simulation and experiment. Wires Systems Biology and Medicine, 5 (4). pp. 391-407.

Maclaren, O J and Sneyd, J. S. and Crampin, E J (2013) What do aquaporin knockout studies tell us about fluid transport in epithelia? Journal of Membrane Biology, 246 (4). pp. 297-305.

Mantzaris, A V and Bassett, D S and Wymbs, N F and Estrada, E and Porter, M A and Mucha, P J and Grafton, S T (2013) Dynamic network centrality summarizes learning in the human brain. Journal of Complex Networks, 1 (1). pp. 83-92.

Markham, D C and Simpson, M J and Maini, P. K. and Gaffney, E. A. and Baker, R. E. (2013) Incorporating spatial correlations into multispecies mean-field models. Physical Review E, 88 . 052713-(9 pages).

Mirams, G R and Arthurs, C J and Bernabeu, M O and Bordas, R and Cooper, J and Corrias, A and Davit, Y. and Dunn, S J and Fletcher, A G and Harvey, D G and Marsh, M E and Osborne, J M and Pathmanathan, P. and Pitt-Francis, J and Southern, J. and Zemzemi, N and Gavaghan, D J (2013) Chaste: an open source C++ library for computational physiology and biology. PLOS Computational Biology, 9 . e1002970.

Moulton, D E and Lega, J (2013) Effect of disjoining in a thin film equation with non-uniform forcing. European Journal of Applied Mathematics, 24 (6). pp. 887-920.

Mukhopadhyay, H and Cordoba, S P and Maini, P. K. and van der Merwe, A and Dushek, O (2013) Systems model of T cell receptor proximal signaling reveals emergent ultrasensitivity. PLOS Computational Biology, 9 (3). e1003004-8 pages.

Murray, P J and Maini, P. K. and Baker, R. E. (2013) Modelling delta-notch perturbations during zebrafish somitogenesis. Developmental Biology, 373 (2). pp. 407-421.

O'Keeffe, S.G. and Moulton, D. E. and Waters, S. L. and Goriely, A. (2013) Growth-induced axial buckling of a slender elastic filament embedded in an isotropic elastic matrix. International Journal of Nonlinear Mechanics, 56 . pp. 94-104.

Rosser, G and Fletcher, A G and Maini, P. K. and Baker, R. E. (2013) The effect of sampling rate on observed statistics in a correlated random walk. The Journal of the Royal Society Interface, 10 (83). pp. 1742-5662.

Rosser, G and Fletcher, A G and Wilkinson, D A and de Beyer, J A and Yates, C A and Armitage, J P and Maini, P. K. and Baker, R. E. (2013) Novel methods for analysing bacterial tracks reveal persistence in rhodobacter sphaeroides. PLOs Computational Biology, 9 (10). e1003276-(18 pages).

Schlackow, M and Marguerat, S and Proudfoot, N and Bahler, J and Erban, R. and Gullerova, M (2013) Genome-wide analysis of poly(A) site selection in schizosaccharomyces pombe,. RNA, 19 . pp. 1-15.

Schumacher, L J and Woolley, T E and Baker, R E (2013) Noise-induced temporal dynamics in Turing systems. Physical Review E, 87 (4). 042719.

Seirin Lee, S and Baker, R E and Gaffney, E. A. and White, S M (2013) Optimal strategies for Aedes aegypti mosquito control via transgenic and sterile insect techniques: endemics and emerging outbreaks. Journal of Theoretical Biology, 331 (1). pp. 78-90.

Vaughan, JR., B. and Baker, R. E. and Kay, D. and Maini, P. K. (2013) A modified Oster-Murray-Harris mechanical model of morphogenesis. Siam Journal of Applied Mathematics, 73 (6). pp. 2124-2142.

Vincent, J P and Fletcher, A G and Baena-Lopez, L A (2013) Mechanisms and mechanics of cell competition in epithelia. Nature Review Molecular Cellular Biology, 14 (9). pp. 581-591.

Yates, C A and Baker, R E (2013) Isotropic model for cluster growth on a regular lattice. Physical Review E, 88 (2). 023304.

Yates, C A and Baker, R. E. (2013) The importance of the Voronoi domain partition for position-jump reaction-diffusion processes on non-uniform rectilinear lattices. Physical Review E, 88 (5). 05471.

Yates, C A and Klingbeil, G. (2013) Recycling random numbers in the stochastic simulation algorithm. Journal of Chemical Physics, 138 (9). 094103.

Zubkov, V S and Breward, C J W and Gaffney, E A (2013) Meniscal fluid dynamics near Marx's line. Bulletin of Mathematical Biology, 75 (9). pp. 1524-1543. ISSN n/a

Book Section

Lewis, M A and Maini, P. K. and Petrovskii, S V (2013) Preface. In: Lecture Notes in Mathematics: Mathematical Biosciences Subseries, 2071. Springer, ix-xi.

Maini, P. K. (2013) Turing's theory of morphogenesis. In: Alan Turing -- His Work and Impact. Elsevier, pp. 684-688.

Murray, P J and Maini, P. K. and Baker, R. E. (2013) Modelling Oscillator synchronisation during vertebrate axis segmentation. In: Springer Proceedings in Mathematics. Pattern Formation in Morphogenesis, 15 . Springer-Verlag Berlin Heidelberg, Heidelberg, pp. 95-105. ISBN 978-3-642-20164-6

Perfahl, H and Byrne, H. M. and Chen, T and Estrella, V and Alarcon, T. and Lapin, A and Gatenby, R. A. and Gillies, R. J. and Lloyd, M C and Maini, P. K. and Reuss, M and Owen, M. R. (2013) 3D Multiscale modelling of angiogenesis and vascular tumour growth. In: Micro and Nano Flow Systems Flow Systems for Bioanalysis. Bioanalysis, 2 . Springer, New York, pp. 29-48.

Scott, J G and Gerlee, P and Basanta, D and Fletcher, A G and Maini, P. K. and Anderson, A R A (2013) Mathematical modeling of the metastatic process. In: Experimental Metastasis: Modeling and Analysis. Springer, Dordrecht, pp. 189-208.

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