Jump to:
Klingbeil, G |
Baker, R |
Buhl, J |
Burrage, K |
Chapman, S |
Cominetti, O |
Cotter, S |
Couzin, I |
Erban, R |
Escudero, C |
Flegg, M |
Franz, B |
Giles, M |
Haskovec, J |
Hwang, H |
Kevrekidis , I |
Kevrekidis, I |
Klingbeil, G |
Kulasiri, D |
Lipkova, J |
Liu, S |
Luo, C |
Maini, P |
Majumdar, A |
Matzavinos, A |
Othmer, H |
Painter, K |
Samarasinghe, S |
Sumpter, D |
Székely Jr., T |
Vejchodsky, T |
Xue, C |
Yates, C |
Zygalakis, KNumber of items: 23.
Klingbeil, G
Klingbeil, G and Erban, R. and Giles, M. and Maini, P. K. (2012) Fat versus thin threading approach on GPUs: application to stochastic simulation of chemical reactions. IEEE Transactions on Parallel & Distributed Systems, 23 (2). pp. 280-287.
Baker, R
Baker, Ruth E. and Yates, C. A. and Erban, R. (2010) From Microscopic to Macroscopic Descriptions of Cell Migration on Growing Domains. Bulletin of Mathematical Biology . ISSN 0092-8240 (In Press)
Baker, Ruth E. and Yates, C. A. and Erban, R. (2009) From microscopic to macroscopic descriptions of cell
migration on growing domains. Not specified . (Submitted)
Buhl, J
Escudero, C. and Yates, C. A. and Buhl, J. and Couzin, I and Erban, R. and Kevrekidis, I. G. (2010) Ergodic directional switching in mobile insect groups. Physical Review E, 82 (1). 011926 (6 pages).
Yates, C. A. and Erban, R. and Escudero, C. and Couzin, I. D. and Buhl, J. and Kevrekidis, I. G. and Maini, P. K. and Sumpter, D. J. T. (2009) Inherent noise can facilitate coherence in collective swarm motion. Not specified . (Submitted)
Yates, C. A. and Erban, R. and Escudero, C. and Couzin, I. D. and Buhl, J. and Kevrekidis, I. G. and Maini, P. K. and Sumpter, D. J. T. (2009) Inherent noise can facilitate coherence in collective swarm motion. PNAS, 106 (14). pp. 5464-5469.
Burrage, K
Székely Jr., T. and Burrage, K. and Erban, R. and Zygalakis, K. C. (2011) Higher-order numerical methods for stochastic simulation of
chemical reaction systems. Journal of Chemical Physics . (Submitted)
Chapman, S
Flegg, M. B. and Chapman, S. J. and Erban, R. (2011) The Two Regime method for optimizing stochastic reaction-diffusion simulations. Proceedings of the National Academy of Sciences . (Submitted)
Lipkova, J. and Zygalakis, K C and Chapman, S. J. and Erban, R. (2010) Analysis of Brownian dynamics simulations of reversible biomolecular reactions. SIAM Journal on Applied Mathematics . ISSN 1095-712X (Submitted)
Erban, R. and Chapman, S. J. and Kevrekidis, I. G. and Vejchodsky, T. (2009) Analysis of a stochastic chemical system close to a sniper bifurcation of its mean field model. Not specified . (Submitted)
Erban, R. and Chapman, S. J. (2009) Stochastic modelling of reaction-diffusion processes:
algorithms for bimolecular reactions. Not specified . (Submitted)
Erban, R. and Chapman, S. J. (2007) Time scale of random sequential adsorption. Physical Review E, 75 (4). 041116-041120. ISSN 1539-3755
Cominetti, O
Cominetti, Ornella and Matzavinos, Anastasios and Samarasinghe, Sandhya and Kulasiri, Don and Liu, Sijia and Maini, P K and Erban, R. (2010) DifFUZZY: A fuzzy clustering algorithm for complex data sets. International Journal of Computational Intelligence in Bioinformatics & Systems Biology, 1 (4). 402-417 .
Cotter, S
Cotter, S. L. and Vejchodsky, T. and Erban, R. (2011) Adaptive finite element method assisted by stochastic simulation of chemical systems. SIAM Journal on Scientific Computing . (Submitted)
Cotter, S. L. and Zygalakis, K. C. and Kevrekidis , I. G. and Erban, R. (2011) A Constrained Approach to Multiscale Stochastic Simulation of
Chemically Reacting Systems. Journal of Chemical Physics . (Submitted)
Couzin, I
Escudero, C. and Yates, C. A. and Buhl, J. and Couzin, I and Erban, R. and Kevrekidis, I. G. (2010) Ergodic directional switching in mobile insect groups. Physical Review E, 82 (1). 011926 (6 pages).
Yates, C. A. and Erban, R. and Escudero, C. and Couzin, I. D. and Buhl, J. and Kevrekidis, I. G. and Maini, P. K. and Sumpter, D. J. T. (2009) Inherent noise can facilitate coherence in collective swarm motion. Not specified . (Submitted)
Yates, C. A. and Erban, R. and Escudero, C. and Couzin, I. D. and Buhl, J. and Kevrekidis, I. G. and Maini, P. K. and Sumpter, D. J. T. (2009) Inherent noise can facilitate coherence in collective swarm motion. PNAS, 106 (14). pp. 5464-5469.
Erban, R
Klingbeil, G and Erban, R. and Giles, M. and Maini, P. K. (2012) Fat versus thin threading approach on GPUs: application to stochastic simulation of chemical reactions. IEEE Transactions on Parallel & Distributed Systems, 23 (2). pp. 280-287.
Cotter, S. L. and Vejchodsky, T. and Erban, R. (2011) Adaptive finite element method assisted by stochastic simulation of chemical systems. SIAM Journal on Scientific Computing . (Submitted)
Cotter, S. L. and Zygalakis, K. C. and Kevrekidis , I. G. and Erban, R. (2011) A Constrained Approach to Multiscale Stochastic Simulation of
Chemically Reacting Systems. Journal of Chemical Physics . (Submitted)
Luo, C. and Majumdar, A. and Erban, R. (2011) The dynamics of bistable liquid crystal wells. Journal of Computational Physics . (Submitted)
Erban, R. and Haskovec, J. (2011) From individual to collective behaviour of coupled velocity jump processes: a locust example. Annales de l'Institut Henri Poincaré (C) Analyse Non Linéaire . (Submitted)
Székely Jr., T. and Burrage, K. and Erban, R. and Zygalakis, K. C. (2011) Higher-order numerical methods for stochastic simulation of
chemical reaction systems. Journal of Chemical Physics . (Submitted)
Franz, B. and Erban, R. (2011) Hybrid modelling of individual movement and collective behaviour. In: Dispersal, individual movement and spatial ecology: A mathematical perspective. Springer. (Submitted)
Klingbeil, G. and Erban, R. and Giles, M. and Maini, P. K. (2011) STOCHSIMGPU: parallel stochastic simulation for the sytems biology toolbox 2 for matlab. Bioinformatics, 27 (8). pp. 1170-1171.
Flegg, M. B. and Chapman, S. J. and Erban, R. (2011) The Two Regime method for optimizing stochastic reaction-diffusion simulations. Proceedings of the National Academy of Sciences . (Submitted)
Lipkova, J. and Zygalakis, K C and Chapman, S. J. and Erban, R. (2010) Analysis of Brownian dynamics simulations of reversible biomolecular reactions. SIAM Journal on Applied Mathematics . ISSN 1095-712X (Submitted)
Cominetti, Ornella and Matzavinos, Anastasios and Samarasinghe, Sandhya and Kulasiri, Don and Liu, Sijia and Maini, P K and Erban, R. (2010) DifFUZZY: A fuzzy clustering algorithm for complex data sets. International Journal of Computational Intelligence in Bioinformatics & Systems Biology, 1 (4). 402-417 .
Escudero, C. and Yates, C. A. and Buhl, J. and Couzin, I and Erban, R. and Kevrekidis, I. G. (2010) Ergodic directional switching in mobile insect groups. Physical Review E, 82 (1). 011926 (6 pages).
Klingbeil, G. and Erban, R. and Giles, M. and Maini, P. K. (2010) Fat vs. thin threading approach on GPUs: application to stochastic simulation of chemical reactions. IEEE Transactions on Parallel & Distributed Systems . (Submitted)
Baker, Ruth E. and Yates, C. A. and Erban, R. (2010) From Microscopic to Macroscopic Descriptions of Cell Migration on Growing Domains. Bulletin of Mathematical Biology . ISSN 0092-8240 (In Press)
Klingbeil, G. and Erban, R. and Giles, M. and Maini, P. K. (2010) STOCHSIMGPU Parallel stochastic simulation for the Systems
Biology Toolbox 2 for MATLAB. Bioinformatics . (Submitted)
Xue, C. and Hwang, H. J. and Painter, K. J. and Erban, R. (2010) Travelling waves in hyperbolic chemotaxis equations. Bulletin of Mathematical Biology . ISSN 0092-8240 (Submitted)
Erban, R. and Chapman, S. J. and Kevrekidis, I. G. and Vejchodsky, T. (2009) Analysis of a stochastic chemical system close to a sniper bifurcation of its mean field model. Not specified . (Submitted)
Xue, Chuan and Othmer, H. G. and Erban, R. (2009) From Individual to Collective Behavior of Unicellular Organisms: Recent Results and Open Problems. Not specified . (Submitted)
Baker, Ruth E. and Yates, C. A. and Erban, R. (2009) From microscopic to macroscopic descriptions of cell
migration on growing domains. Not specified . (Submitted)
Yates, C. A. and Erban, R. and Escudero, C. and Couzin, I. D. and Buhl, J. and Kevrekidis, I. G. and Maini, P. K. and Sumpter, D. J. T. (2009) Inherent noise can facilitate coherence in collective swarm motion. Not specified . (Submitted)
Yates, C. A. and Erban, R. and Escudero, C. and Couzin, I. D. and Buhl, J. and Kevrekidis, I. G. and Maini, P. K. and Sumpter, D. J. T. (2009) Inherent noise can facilitate coherence in collective swarm motion. PNAS, 106 (14). pp. 5464-5469.
Erban, R. and Chapman, S. J. (2009) Stochastic modelling of reaction-diffusion processes:
algorithms for bimolecular reactions. Not specified . (Submitted)
Erban, R. and Chapman, S. J. (2007) Time scale of random sequential adsorption. Physical Review E, 75 (4). 041116-041120. ISSN 1539-3755
Escudero, C
Escudero, C. and Yates, C. A. and Buhl, J. and Couzin, I and Erban, R. and Kevrekidis, I. G. (2010) Ergodic directional switching in mobile insect groups. Physical Review E, 82 (1). 011926 (6 pages).
Yates, C. A. and Erban, R. and Escudero, C. and Couzin, I. D. and Buhl, J. and Kevrekidis, I. G. and Maini, P. K. and Sumpter, D. J. T. (2009) Inherent noise can facilitate coherence in collective swarm motion. Not specified . (Submitted)
Yates, C. A. and Erban, R. and Escudero, C. and Couzin, I. D. and Buhl, J. and Kevrekidis, I. G. and Maini, P. K. and Sumpter, D. J. T. (2009) Inherent noise can facilitate coherence in collective swarm motion. PNAS, 106 (14). pp. 5464-5469.
Flegg, M
Flegg, M. B. and Chapman, S. J. and Erban, R. (2011) The Two Regime method for optimizing stochastic reaction-diffusion simulations. Proceedings of the National Academy of Sciences . (Submitted)
Franz, B
Franz, B. and Erban, R. (2011) Hybrid modelling of individual movement and collective behaviour. In: Dispersal, individual movement and spatial ecology: A mathematical perspective. Springer. (Submitted)
Giles, M
Klingbeil, G and Erban, R. and Giles, M. and Maini, P. K. (2012) Fat versus thin threading approach on GPUs: application to stochastic simulation of chemical reactions. IEEE Transactions on Parallel & Distributed Systems, 23 (2). pp. 280-287.
Klingbeil, G. and Erban, R. and Giles, M. and Maini, P. K. (2011) STOCHSIMGPU: parallel stochastic simulation for the sytems biology toolbox 2 for matlab. Bioinformatics, 27 (8). pp. 1170-1171.
Klingbeil, G. and Erban, R. and Giles, M. and Maini, P. K. (2010) Fat vs. thin threading approach on GPUs: application to stochastic simulation of chemical reactions. IEEE Transactions on Parallel & Distributed Systems . (Submitted)
Klingbeil, G. and Erban, R. and Giles, M. and Maini, P. K. (2010) STOCHSIMGPU Parallel stochastic simulation for the Systems
Biology Toolbox 2 for MATLAB. Bioinformatics . (Submitted)
Haskovec, J
Erban, R. and Haskovec, J. (2011) From individual to collective behaviour of coupled velocity jump processes: a locust example. Annales de l'Institut Henri Poincaré (C) Analyse Non Linéaire . (Submitted)
Hwang, H
Xue, C. and Hwang, H. J. and Painter, K. J. and Erban, R. (2010) Travelling waves in hyperbolic chemotaxis equations. Bulletin of Mathematical Biology . ISSN 0092-8240 (Submitted)
Kevrekidis , I
Cotter, S. L. and Zygalakis, K. C. and Kevrekidis , I. G. and Erban, R. (2011) A Constrained Approach to Multiscale Stochastic Simulation of
Chemically Reacting Systems. Journal of Chemical Physics . (Submitted)
Kevrekidis, I
Escudero, C. and Yates, C. A. and Buhl, J. and Couzin, I and Erban, R. and Kevrekidis, I. G. (2010) Ergodic directional switching in mobile insect groups. Physical Review E, 82 (1). 011926 (6 pages).
Erban, R. and Chapman, S. J. and Kevrekidis, I. G. and Vejchodsky, T. (2009) Analysis of a stochastic chemical system close to a sniper bifurcation of its mean field model. Not specified . (Submitted)
Yates, C. A. and Erban, R. and Escudero, C. and Couzin, I. D. and Buhl, J. and Kevrekidis, I. G. and Maini, P. K. and Sumpter, D. J. T. (2009) Inherent noise can facilitate coherence in collective swarm motion. Not specified . (Submitted)
Yates, C. A. and Erban, R. and Escudero, C. and Couzin, I. D. and Buhl, J. and Kevrekidis, I. G. and Maini, P. K. and Sumpter, D. J. T. (2009) Inherent noise can facilitate coherence in collective swarm motion. PNAS, 106 (14). pp. 5464-5469.
Klingbeil, G
Klingbeil, G. and Erban, R. and Giles, M. and Maini, P. K. (2011) STOCHSIMGPU: parallel stochastic simulation for the sytems biology toolbox 2 for matlab. Bioinformatics, 27 (8). pp. 1170-1171.
Klingbeil, G. and Erban, R. and Giles, M. and Maini, P. K. (2010) Fat vs. thin threading approach on GPUs: application to stochastic simulation of chemical reactions. IEEE Transactions on Parallel & Distributed Systems . (Submitted)
Klingbeil, G. and Erban, R. and Giles, M. and Maini, P. K. (2010) STOCHSIMGPU Parallel stochastic simulation for the Systems
Biology Toolbox 2 for MATLAB. Bioinformatics . (Submitted)
Kulasiri, D
Cominetti, Ornella and Matzavinos, Anastasios and Samarasinghe, Sandhya and Kulasiri, Don and Liu, Sijia and Maini, P K and Erban, R. (2010) DifFUZZY: A fuzzy clustering algorithm for complex data sets. International Journal of Computational Intelligence in Bioinformatics & Systems Biology, 1 (4). 402-417 .
Lipkova, J
Lipkova, J. and Zygalakis, K C and Chapman, S. J. and Erban, R. (2010) Analysis of Brownian dynamics simulations of reversible biomolecular reactions. SIAM Journal on Applied Mathematics . ISSN 1095-712X (Submitted)
Liu, S
Cominetti, Ornella and Matzavinos, Anastasios and Samarasinghe, Sandhya and Kulasiri, Don and Liu, Sijia and Maini, P K and Erban, R. (2010) DifFUZZY: A fuzzy clustering algorithm for complex data sets. International Journal of Computational Intelligence in Bioinformatics & Systems Biology, 1 (4). 402-417 .
Luo, C
Luo, C. and Majumdar, A. and Erban, R. (2011) The dynamics of bistable liquid crystal wells. Journal of Computational Physics . (Submitted)
Maini, P
Klingbeil, G and Erban, R. and Giles, M. and Maini, P. K. (2012) Fat versus thin threading approach on GPUs: application to stochastic simulation of chemical reactions. IEEE Transactions on Parallel & Distributed Systems, 23 (2). pp. 280-287.
Klingbeil, G. and Erban, R. and Giles, M. and Maini, P. K. (2011) STOCHSIMGPU: parallel stochastic simulation for the sytems biology toolbox 2 for matlab. Bioinformatics, 27 (8). pp. 1170-1171.
Cominetti, Ornella and Matzavinos, Anastasios and Samarasinghe, Sandhya and Kulasiri, Don and Liu, Sijia and Maini, P K and Erban, R. (2010) DifFUZZY: A fuzzy clustering algorithm for complex data sets. International Journal of Computational Intelligence in Bioinformatics & Systems Biology, 1 (4). 402-417 .
Klingbeil, G. and Erban, R. and Giles, M. and Maini, P. K. (2010) Fat vs. thin threading approach on GPUs: application to stochastic simulation of chemical reactions. IEEE Transactions on Parallel & Distributed Systems . (Submitted)
Klingbeil, G. and Erban, R. and Giles, M. and Maini, P. K. (2010) STOCHSIMGPU Parallel stochastic simulation for the Systems
Biology Toolbox 2 for MATLAB. Bioinformatics . (Submitted)
Yates, C. A. and Erban, R. and Escudero, C. and Couzin, I. D. and Buhl, J. and Kevrekidis, I. G. and Maini, P. K. and Sumpter, D. J. T. (2009) Inherent noise can facilitate coherence in collective swarm motion. Not specified . (Submitted)
Yates, C. A. and Erban, R. and Escudero, C. and Couzin, I. D. and Buhl, J. and Kevrekidis, I. G. and Maini, P. K. and Sumpter, D. J. T. (2009) Inherent noise can facilitate coherence in collective swarm motion. PNAS, 106 (14). pp. 5464-5469.
Majumdar, A
Luo, C. and Majumdar, A. and Erban, R. (2011) The dynamics of bistable liquid crystal wells. Journal of Computational Physics . (Submitted)
Matzavinos, A
Cominetti, Ornella and Matzavinos, Anastasios and Samarasinghe, Sandhya and Kulasiri, Don and Liu, Sijia and Maini, P K and Erban, R. (2010) DifFUZZY: A fuzzy clustering algorithm for complex data sets. International Journal of Computational Intelligence in Bioinformatics & Systems Biology, 1 (4). 402-417 .
Othmer, H
Xue, Chuan and Othmer, H. G. and Erban, R. (2009) From Individual to Collective Behavior of Unicellular Organisms: Recent Results and Open Problems. Not specified . (Submitted)
Painter, K
Xue, C. and Hwang, H. J. and Painter, K. J. and Erban, R. (2010) Travelling waves in hyperbolic chemotaxis equations. Bulletin of Mathematical Biology . ISSN 0092-8240 (Submitted)
Samarasinghe, S
Cominetti, Ornella and Matzavinos, Anastasios and Samarasinghe, Sandhya and Kulasiri, Don and Liu, Sijia and Maini, P K and Erban, R. (2010) DifFUZZY: A fuzzy clustering algorithm for complex data sets. International Journal of Computational Intelligence in Bioinformatics & Systems Biology, 1 (4). 402-417 .
Sumpter, D
Yates, C. A. and Erban, R. and Escudero, C. and Couzin, I. D. and Buhl, J. and Kevrekidis, I. G. and Maini, P. K. and Sumpter, D. J. T. (2009) Inherent noise can facilitate coherence in collective swarm motion. Not specified . (Submitted)
Yates, C. A. and Erban, R. and Escudero, C. and Couzin, I. D. and Buhl, J. and Kevrekidis, I. G. and Maini, P. K. and Sumpter, D. J. T. (2009) Inherent noise can facilitate coherence in collective swarm motion. PNAS, 106 (14). pp. 5464-5469.
Székely Jr., T
Székely Jr., T. and Burrage, K. and Erban, R. and Zygalakis, K. C. (2011) Higher-order numerical methods for stochastic simulation of
chemical reaction systems. Journal of Chemical Physics . (Submitted)
Vejchodsky, T
Cotter, S. L. and Vejchodsky, T. and Erban, R. (2011) Adaptive finite element method assisted by stochastic simulation of chemical systems. SIAM Journal on Scientific Computing . (Submitted)
Erban, R. and Chapman, S. J. and Kevrekidis, I. G. and Vejchodsky, T. (2009) Analysis of a stochastic chemical system close to a sniper bifurcation of its mean field model. Not specified . (Submitted)
Xue, C
Xue, C. and Hwang, H. J. and Painter, K. J. and Erban, R. (2010) Travelling waves in hyperbolic chemotaxis equations. Bulletin of Mathematical Biology . ISSN 0092-8240 (Submitted)
Xue, Chuan and Othmer, H. G. and Erban, R. (2009) From Individual to Collective Behavior of Unicellular Organisms: Recent Results and Open Problems. Not specified . (Submitted)
Yates, C
Escudero, C. and Yates, C. A. and Buhl, J. and Couzin, I and Erban, R. and Kevrekidis, I. G. (2010) Ergodic directional switching in mobile insect groups. Physical Review E, 82 (1). 011926 (6 pages).
Baker, Ruth E. and Yates, C. A. and Erban, R. (2010) From Microscopic to Macroscopic Descriptions of Cell Migration on Growing Domains. Bulletin of Mathematical Biology . ISSN 0092-8240 (In Press)
Baker, Ruth E. and Yates, C. A. and Erban, R. (2009) From microscopic to macroscopic descriptions of cell
migration on growing domains. Not specified . (Submitted)
Yates, C. A. and Erban, R. and Escudero, C. and Couzin, I. D. and Buhl, J. and Kevrekidis, I. G. and Maini, P. K. and Sumpter, D. J. T. (2009) Inherent noise can facilitate coherence in collective swarm motion. Not specified . (Submitted)
Yates, C. A. and Erban, R. and Escudero, C. and Couzin, I. D. and Buhl, J. and Kevrekidis, I. G. and Maini, P. K. and Sumpter, D. J. T. (2009) Inherent noise can facilitate coherence in collective swarm motion. PNAS, 106 (14). pp. 5464-5469.
Zygalakis, K
Cotter, S. L. and Zygalakis, K. C. and Kevrekidis , I. G. and Erban, R. (2011) A Constrained Approach to Multiscale Stochastic Simulation of
Chemically Reacting Systems. Journal of Chemical Physics . (Submitted)
Székely Jr., T. and Burrage, K. and Erban, R. and Zygalakis, K. C. (2011) Higher-order numerical methods for stochastic simulation of
chemical reaction systems. Journal of Chemical Physics . (Submitted)
Lipkova, J. and Zygalakis, K C and Chapman, S. J. and Erban, R. (2010) Analysis of Brownian dynamics simulations of reversible biomolecular reactions. SIAM Journal on Applied Mathematics . ISSN 1095-712X (Submitted)
This list was generated on Mon May 21 17:19:09 2012 BST.
