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Jump to: Alarcon, T | Auffray, C | Baltrusch, S | Bell, C | Bennett, M | Bernabeu, M | Betteridge, R | Bluthgen, N | Bock, I | Bodmer, W | Bordas, R | Breward, C | Byrne, H | Cascante, M | Chapman, S | Chen, T | Cho, K | Ciliberto, A | Clements, J | Connor, A | Cooper, J | Dale, T | Davit, Y | Dinnyés, A | Doyle, B | Drasdo, D | Edwards, C | El Haj, A | Estrella, V | Fell, D | Ferrell, J | Figueredo, G | Flegg, J | Flegg, M | Fletcher, A | Gallahan, D | Garny, A | Gatenby, R | Gavaghan, D | Gilles, R | Gillies, R | Green, J | Guenther, U | Hall, C | Harms, B | Herzel, H | Hodgman, C | Hubbard, M | Hutmacher, D | Jain, H | Jaster, R | Jeffrey, M | Jensen, O | Johnston, M | Joshi, T | Juhász, B | Junghanss, C | Kang, J | Kershaw, S | King, J | Kovács, K | Kunz, M | Lapin, A | Laplace, F | Leeuwen, I | Lenormand, P | Levi, F | Lewis, C | Linnebacher, M | Lloyd, M | Loessner, D | Lovrics, A | Lowengrub, J | Madzvamuse, A | Maini, P | Malik, A | Mann, G | Marchant, B | Marcus, F | McElwain, D | McKeever, S | Meyer-Hermann, M | Mirams, G | Moldovan, N | Momtahan, L | Moroney, T | Muraro, D | Murphy, J | Murray, P | Norbury, J | O'Dea, R | Osborne, J | Osbourne, J | Owen, M | Panovska, J | Pathmanathan, P | Perfahl, H | Pitt-Francis, J | Prokopiou, S | Quintard, M | Rateitschak, K | Reuss, M | Richardson, A | Robinson, R | Rodriguez, B | Sansom, O | Schafer, R | Schnell, S | Schurrle, K | Sekimura, T | Sers, C | Shakesheff, K | Shibata, D | Shin, S | Sotiris, A | Stamper, I | Tyson, J | Varma, S | Vera, J | Voß, U | Wake, G | Walter, A | Waters, S | Webb, S | White, M | Whiteley, J | Wilson, M | Wolkenhauer, O | Young, S | Yu, G | Zhivotovsky, B | de Smet, I | van Leeuwen, I
Number of items: 62.

Alarcon, T

Perfahl, H and Byrne, H. M. and Chen, T and Estrella, V and Alarcon, T. and Lapin, A and Gatenby, R. A. and Gillies, R. J. and Lloyd, M C and Maini, P. K. and Reuss, M and Owen, M. R. (2013) 3D Multiscale modelling of angiogenesis and vascular tumour growth. In: Micro and Nano Flow Systems Flow Systems for Bioanalysis. Bioanalysis, 2 . Springer, New York, pp. 29-48.

Perfahl, H and Byrne, H. M. and Chen, T and Estrella, V and Alarcon, T. and Lapin, A and Gatenby, R. A. and Gilles, R and Lloyd, M C and Maini, P. K. and Reuss, M and Owen, M. R. (2011) Multiscale modelling of vascular tumour growth in 3D: the roles of domain size & boundary condition. PLOs One, 6 (4). 17 pages.

Owen, M. R. and Alarcon, T. and Maini, P. K. and Byrne, H. M. (2009) Angiogenesis and vascular remodelling in normal and cancerous tissues. Journal of Mathematical Biology, 58 (4-5). pp. 689-721.

Byrne, H. M. and van Leeuwen, I. M. M. and Owen, M. R. and Alarcon, T. and Maini, P. K. (2008) Multiscale modelling of solid tumour growth. In: Selected Topics in Cancer Modeling. Genesis, Evolution, Immune Competition, & Therapy, n/a (n/a). Birkhauser, Boston, USA, pp. 449-473. ISBN 978-0-8176-4712-4

Maini, P. K. and Alarcon, T. and Byrne, H. M. and Owen, M. R. and Murphy, J. (2007) Structural adaptation in normal and cancerous vasculature. In: In: MathEverywhere: Deterministic and Stochastic Modelling in Biomedicine, Economics and Industry. Springer, Berlin, Germany, pp. 165-178. ISBN 3-540-44445-9

Maini, P. K. and Alarcon, T. and Byrne, H. M. and Owen, M. R. and Murphy, J. (2007) Structural adaptation in normal and cancerous vasculature. In: In: MathEverywhere: Deterministic and Stochastic Modelling in Biomedicine, Economics and Industry. Springer, Berlin, Germany, pp. 165-178. ISBN 3-540-44445-9

Maini, P. K. and Alarcon, T. and Byrne, H. M. and Owen, M. R. and Murphy, J. (2007) Structural adaptation in normal and cancerous vasculature. In: In: MathEverywhere: Deterministic and Stochastic Modelling in Biomedicine, Economics and Industry. Springer, Berlin, Germany, pp. 165-178. ISBN 3-540-44445-9

Betteridge, R. and Owen, M. R. and Byrne, H. M. and Alarcon, T. and Maini, P. K. (2006) The impact of cell crowding and active cell movement on vascular tumour growth. Networks and Heterogeneous Media, 1 (4). pp. 515-535.

Byrne, H. M. and Owen, M. R. and Alarcon, T. and Murphy, J. and Maini, P. K. (2006) Modelling the response of vascular tumours to chemotherapy: A multiscale approach. Mathematical Models and Methods in Applied Sciences, 16 (7S). pp. 1219-1241.

Byrne, H. M. and Alarcon, T. and Owen, M. R. and Webb, S. D. and Maini, P. K. (2006) Modelling aspects of cancer dynamics: a review. Philosophical Transactions of the Royal Society A, 364 (1843). pp. 1563-1578.

Alarcon, T. and Owen, M. R. and Byrne, H. M. and Maini, P. K. (2006) Multiscale modelling of tumour growth and therapy: the influence of vessel normalisation on chemotherapy. Computational & Mathematical Methods in Medicine, 7 (2-3). pp. 85-119.

Byrne, H. M. and Owen, M. R. and Alarcon, T. and Maini, P. K. (2006) Cancer disease: integrative modelling approaches. 3rd IEEE International Symposium on Biomedical Imaging (1). pp. 806-809.

Alarcon, T. and Byrne, H. M. and Maini, P. K. and Panovska, J. (2006) Mathematical modelling of angiogenesis and vascular adaptation. In, Multidisciplinary Approaches to the Theory of Medicine, R. Paton and L.A. McNamara (eds) Studies in Multidisciplinarity,, 3 . pp. 369-387.

Maini, P. K. and Alarcon, T. and Byrne, H. M. (2006) Modelling aspects of vascular cancer development. Proceedings of the International Symposium on Mathematical and Computational Biology, R.P. Mondaini and R. Dilao (eds), World Scientific . 1 -12.

Byrne, H. M. and Alarcon, T. and Maini, P. K. (2005) Cancer modelling: Getting to the heart of the problem. Journal of Physiology, 561P, SA9 . 4P.

Alarcon, T. and Byrne, H. M. and Maini, P. K. (2005) A design principle for vascular beds: the effects of complex blood rheology. Microvascular Research, 69 (3). pp. 156-172.

Alarcon, T. and Byrne, H. M. and Maini, P. K. (2005) A multiple scale model for tumor growth. Multiscale Model Simulation, 3 (2). pp. 440-475.

Alarcon, T. and Byrne, H. M. and Maini, P. K. (2004) A mathematical model of the effects of hypoxia on the cell-cycle of normal and cancer cells. Journal of theoretical Biology, 229 (3). pp. 395-411.

Alarcon, T. and Byrne, H. M. and Maini, P. K. (2004) Towards whole-organ modelling of tumour growth. Progress in Biophysics and Molecular Biology, 85 (2-3). pp. 451-472.

Alarcon, T. and Byrne, H. M. and Maini, P. K. (2003) A cellular automaton model for tumour growth in inhomogeneous environment. Journal of Theoretical Biology, 225 (2). pp. 257-274.

Auffray, C

Drasdo, D and Fell, D and Ferrell, J and Gallahan, D and Gatenby, R. A. and Guenther, U and Herzel, H. and Junghanss, C and Kunz, M and Laplace, F and van Leeuwen, I. M. M. and Lenormand, P and Levi, F and Linnebacher, M and Lowengrub, J and Maini, P. K. and Marcus, F and Malik, A and Rateitschak, K and Sansom, O and Schafer, R and Schurrle, K and Sers, C and Schnell, S. and Harms, B and Shibata, D and Tyson, J and Vera, J and White, M and Zhivotovsky, B and Jaster, R and Wolkenhauer, O and Auffray, C and Baltrusch, S and Bluthgen, N and Byrne, H. M. and Cascante, M and Ciliberto, A and Dale, T (2010) Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research, 70 (1). pp. 12-13.

Baltrusch, S

Drasdo, D and Fell, D and Ferrell, J and Gallahan, D and Gatenby, R. A. and Guenther, U and Herzel, H. and Junghanss, C and Kunz, M and Laplace, F and van Leeuwen, I. M. M. and Lenormand, P and Levi, F and Linnebacher, M and Lowengrub, J and Maini, P. K. and Marcus, F and Malik, A and Rateitschak, K and Sansom, O and Schafer, R and Schurrle, K and Sers, C and Schnell, S. and Harms, B and Shibata, D and Tyson, J and Vera, J and White, M and Zhivotovsky, B and Jaster, R and Wolkenhauer, O and Auffray, C and Baltrusch, S and Bluthgen, N and Byrne, H. M. and Cascante, M and Ciliberto, A and Dale, T (2010) Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research, 70 (1). pp. 12-13.

Bell, C

Bell, C. G. and Byrne, H. M. and Whiteley, J. P. and Waters, S. L. (2012) A note on heat and mass transfer from a sphere in Stokes
flow at low Péclet number.
Applied Mathematics Letters . (Submitted)

Bennett, M

Muraro, D. and Voß, U. and Wilson, M. and Bennett, M. and Byrne, H. M. and de Smet, I. and Hodgman, C. and King, J. R. (2012) Inference of the genetic network regulating lateral root initiation in Arabidopsis thaliana. Transactions on Computational Biology and Bioinformatics . (Submitted)

Muraro, D. and Byrne, H. M. and King, J. R. and Bennett, M. J. (2012) Mathematical modelling plant signalling networks. Mathematical Modelling of Natural Phenomena . (Submitted)

Bernabeu, M

Pitt-Francis, J and Pathmanathan, P. and Bernabeu, M O and Bordas, R and Cooper, J and Fletcher, A G and Mirams, G R and Murray, P J and Osbourne, J and Walter, A and Chapman, S. J. and Garny, A. and van Leeuwen, I. M. M. and Maini, P. K. and Rodriguez, B and Waters, S. L. and Whiteley, J. P. and Byrne, H. M. and Gavaghan, D. J. (2009) Chaste: a test-driven approach to software development for biological modelling. Computer Physics Communications, 180 (12). pp. 2452-2471.

Pitt-Francis, J and Pathmanathan, P. and Bernabeu, M O and Bordas, R and Cooper, J and Fletcher, A G and Mirams, G R and Murray, P J and Osbourne, J and Walter, A and Chapman, S. J. and Garny, A. and van Leeuwen, I. M. M. and Maini, P. K. and Rodriguez, B and Whiteley, J. P. and Byrne, H. M. and Gavaghan, D. J. (2009) Chaste: a test-driven approach to software development for physiological modelling. Not specified . (Submitted)

Betteridge, R

Betteridge, R. and Owen, M. R. and Byrne, H. M. and Alarcon, T. and Maini, P. K. (2006) The impact of cell crowding and active cell movement on vascular tumour growth. Networks and Heterogeneous Media, 1 (4). pp. 515-535.

Bluthgen, N

Drasdo, D and Fell, D and Ferrell, J and Gallahan, D and Gatenby, R. A. and Guenther, U and Herzel, H. and Junghanss, C and Kunz, M and Laplace, F and van Leeuwen, I. M. M. and Lenormand, P and Levi, F and Linnebacher, M and Lowengrub, J and Maini, P. K. and Marcus, F and Malik, A and Rateitschak, K and Sansom, O and Schafer, R and Schurrle, K and Sers, C and Schnell, S. and Harms, B and Shibata, D and Tyson, J and Vera, J and White, M and Zhivotovsky, B and Jaster, R and Wolkenhauer, O and Auffray, C and Baltrusch, S and Bluthgen, N and Byrne, H. M. and Cascante, M and Ciliberto, A and Dale, T (2010) Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research, 70 (1). pp. 12-13.

Bock, I

Lovrics, A. and Yu, G. and Juhász, B. and Bock, I. and Byrne, H. M. and Dinnyés, A. and Kovács, K. A. (2012) Boolean modelling reveals new regulatory connections between transcription factors orchestrating the development of the ventral spinal cord. Journal of the Royal Society Interface . (Submitted)

Bodmer, W

van Leeuwen, I. M. M. and Byrne, H. M. and Johnston, M. D. and Edwards, C. M. and Chapman, S. J. and Bodmer, W. F. and Maini, P. K. (2008) Modelling multiscale aspects of colorectal cancer. AIP Conference Proceedings, 971 (1). pp. 3-7.

Bordas, R

Pitt-Francis, J and Pathmanathan, P. and Bernabeu, M O and Bordas, R and Cooper, J and Fletcher, A G and Mirams, G R and Murray, P J and Osbourne, J and Walter, A and Chapman, S. J. and Garny, A. and van Leeuwen, I. M. M. and Maini, P. K. and Rodriguez, B and Waters, S. L. and Whiteley, J. P. and Byrne, H. M. and Gavaghan, D. J. (2009) Chaste: a test-driven approach to software development for biological modelling. Computer Physics Communications, 180 (12). pp. 2452-2471.

Pitt-Francis, J and Pathmanathan, P. and Bernabeu, M O and Bordas, R and Cooper, J and Fletcher, A G and Mirams, G R and Murray, P J and Osbourne, J and Walter, A and Chapman, S. J. and Garny, A. and van Leeuwen, I. M. M. and Maini, P. K. and Rodriguez, B and Whiteley, J. P. and Byrne, H. M. and Gavaghan, D. J. (2009) Chaste: a test-driven approach to software development for physiological modelling. Not specified . (Submitted)

Breward, C

Breward, C. J. W. and Byrne, H. M. and Lewis, C. E. (2003) A multiphase model describing vascular tumour growth. Bulletin of Mathematical Biology, 65 . pp. 609-640.

Breward, C. J. W. and Byrne, H. M. and Lewis, C. E. (2002) The role of cell-cell interactions in a two-phase model for avascular tumour growth. Journal of Mathematical Biology, 45 (2). pp. 125-152.

Byrne, H

Perfahl, H and Byrne, H. M. and Chen, T and Estrella, V and Alarcon, T. and Lapin, A and Gatenby, R. A. and Gillies, R. J. and Lloyd, M C and Maini, P. K. and Reuss, M and Owen, M. R. (2013) 3D Multiscale modelling of angiogenesis and vascular tumour growth. In: Micro and Nano Flow Systems Flow Systems for Bioanalysis. Bioanalysis, 2 . Springer, New York, pp. 29-48.

Sotiris, A. and Prokopiou, S. A. and Byrne, H. M. and Jeffrey, M. R. and Robinson, R. S. and Mann, G. E. and Owen, M. R. (2013) Mathematical analysis of a model for the growth of the bovine corpus luteum. Journal of Mathematical Biology . (Submitted)

Lovrics, A. and Yu, G. and Juhász, B. and Bock, I. and Byrne, H. M. and Dinnyés, A. and Kovács, K. A. (2012) Boolean modelling reveals new regulatory connections between transcription factors orchestrating the development of the ventral spinal cord. Journal of the Royal Society Interface . (Submitted)

Wake, G. C. and Byrne, H. M. (2012) Calculus from the past: multiple delay systems arising in cancer cell modelling. ANZIAM Journal . (Submitted)

Kershaw, S. K. and Byrne, H. M. and Gavaghan, D. J. and Osborne, J. M. (2012) Colorectal Cancer Through Simulation and Experiment. IET Systems Biology . (Submitted)

Jain, H. V. and Richardson, A. and Meyer-Hermann, M. E. and Byrne, H. M. (2012) Exploiting the synergy between carboplatin and ABT-737 in the treatment of ovarian carcinomas. Cancer Research . (Submitted)

Muraro, D. and Voß, U. and Wilson, M. and Bennett, M. and Byrne, H. M. and de Smet, I. and Hodgman, C. and King, J. R. (2012) Inference of the genetic network regulating lateral root initiation in Arabidopsis thaliana. Transactions on Computational Biology and Bioinformatics . (Submitted)

O'Dea, R. D. and Osborne, J. M. and El Haj, A. J. and Byrne, H. M. and Waters, S. L. (2012) The interplay between tissue growth and scaffold degradation in engineered tissue constructs. Journal of Mathematical Biology . (Submitted)

Byrne, H. M. (2012) Mathematical biomedicine and modeling avascular tumor growth. In: Mathematics and Life Sciences. De Gruyter. (Submitted)

Muraro, D. and Byrne, H. M. and King, J. R. and Bennett, M. J. (2012) Mathematical modelling plant signalling networks. Mathematical Modelling of Natural Phenomena . (Submitted)

Jain, H. V. and Moldovan, N. I. and Byrne, H. M. (2012) Modeling Stem/Progenitor Cell-Induced Neovascularization and
Oxygenation around Solid Implants.
Tissue Engineering Part C . (Submitted)

Hubbard, M. E. and Byrne, H. M. (2012) Multiphase modelling of vascular tumour growth in two spatial dimensions. Journal of Theoretical Biology . (Submitted)

Bell, C. G. and Byrne, H. M. and Whiteley, J. P. and Waters, S. L. (2012) A note on heat and mass transfer from a sphere in Stokes
flow at low Péclet number.
Applied Mathematics Letters . (Submitted)

Connor, A. J. and Cooper, J. and Byrne, H. M. and Maini, P. K. and McKeever, S. (2012) Object-Oriented Paradigms for Modelling Vascular
Tumour Growth: a Case Study.
In: SIMUL2012. (Submitted)

Connor, A. J. and Cooper, J and Byrne, H. M. and Maini, P. K. and McKeever, S. (2012) Object-oriented paradigms for modelling vascular tumor growth: a case study. In: The Fourth International Conference on Advances in Systems Simulation. Simul 2012 . Iaria, Lisbon, pp. 74-83.

Figueredo, G. and Joshi, T. and Osborne, J. and Byrne, H. M. and Owen, M. (2012) On-lattice agent-based simulation of populations of cells within the open-source chaste framework. Interface Focus . (Submitted)

Jain, H. V. and Byrne, H. M. (2012) Qualitative Analysis of an Integro-Differential Equation Model of Periodic Chemotherapy. Applied Maths Letters . (Submitted)

Davit, Y. and Byrne, H. M. and Osborne, J. M. and Pitt-Francis, J. M. and Gavaghan, D. J. and Quintard, M. (2012) Solute transport within porous biofilms: diffusion or dispersion? Physical Review E . (Submitted)

Mirams, G R and Fletcher, A G and Maini, P. K. and Byrne, H. M. (2012) A theoretical investigation of the effect of proliferation & adhesion on monoclonal conversion in the colonic crypt. Journal of Theoretical Biology, 312 (2). pp. 143-156.

Mirams, G R and Fletcher, A G and Maini, P. K. and Byrne, H. M. (2012) A theoretical investigation of the effect of proliferation and
adhesion on monoclonal conversion in the colonic crypt.
Journal of Theoretical Biology . (Submitted)

Davit, Y. and Osborne, J. M. and Byrne, H. M. and Gavaghan, D. J. and Pitt-Francis, J. M. (2012) Validity of the Cauchy-Born rule applied to discrete cellular-scale models of biological tissues. Physical Review E . (Submitted)

Loessner, D. and Flegg, J. A. and Byrne, H. M. and Hall, C. L. and Moroney, T. J. and Clements, J. A. and McElwain, D. L. S. and Hutmacher, D. W. (2011) Growth of confined cancer spheroids: a combined experimental and mathematical modelling approach. Integrative Biology . (Submitted)

Perfahl, H and Byrne, H. M. and Chen, T and Estrella, V and Alarcon, T. and Lapin, A and Gatenby, R. A. and Gilles, R and Lloyd, M C and Maini, P. K. and Reuss, M and Owen, M. R. (2011) Multiscale modelling of vascular tumour growth in 3D: the roles of domain size & boundary condition. PLOs One, 6 (4). 17 pages.

Flegg, J. A. and Byrne, H. M. and Flegg, M. B. and McElwain, D. L. S. (2011) Wound healing angiogenesis the clinical implications of a simple mathematical model. Journal of Theoretical Biology . (Submitted)

Osborne, J and Walter, A and Kershaw, S. K. and Mirams, G R and Fletcher, A G and Pathmanathan, P. and Gavaghan, D. J. and Jensen, O E and Maini, P. K. and Byrne, H. M. (2010) A hybrid approach to multi-scale modelling of cancer. Philosophical Transactions of the Royal Society A, 368 (1930). pp. 5013-5028. ISSN 0962-8428

Osborne, J. M. and O'Dea, R. D. and Whiteley, J. P. and Byrne, H. M. and Waters, S. L. (2010) The influence of bioreactor geometry and the mechanical
environment on engineered tissues.
ASME Journal of Biomechanical Engineering, 132 No. 5 (pp 51006).

Loessner, D. and Flegg, J. A. and Byrne, H. M. and Hall, C. L. and Moroney, T. J. and Clements, J. A. and Hutmacher, D. W. and McElwain, D. L. S. (2010) Modeling the growth of multicellular cancer spheroids in a
bioengineered 3D microenvironment and their treatment with an
anti-cancer drug.
PLoS Computational Biology . (Submitted)

Murray, P J and Kang, J W and Mirams, G R and Shin, S Y and Byrne, H. M. and Maini, P. K. and Cho, K H (2010) Modelling spatially regulated B-catenin dynamics & invasion in intestinal crypts. Biophysical Journal , 99 (3). pp. 716-725.

Stamper, I. J. and Owen, M. R. and Maini, P. K. and Byrne, H. M. (2010) Oscillatory dynamics in a model of vascular tumour growth -- implications for chemotherapy. Biology Direct, 5 (27). pp. 1-17.

Drasdo, D and Fell, D and Ferrell, J and Gallahan, D and Gatenby, R. A. and Guenther, U and Herzel, H. and Junghanss, C and Kunz, M and Laplace, F and van Leeuwen, I. M. M. and Lenormand, P and Levi, F and Linnebacher, M and Lowengrub, J and Maini, P. K. and Marcus, F and Malik, A and Rateitschak, K and Sansom, O and Schafer, R and Schurrle, K and Sers, C and Schnell, S. and Harms, B and Shibata, D and Tyson, J and Vera, J and White, M and Zhivotovsky, B and Jaster, R and Wolkenhauer, O and Auffray, C and Baltrusch, S and Bluthgen, N and Byrne, H. M. and Cascante, M and Ciliberto, A and Dale, T (2010) Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research, 70 (1). pp. 12-13.

Owen, M. R. and Alarcon, T. and Maini, P. K. and Byrne, H. M. (2009) Angiogenesis and vascular remodelling in normal and cancerous tissues. Journal of Mathematical Biology, 58 (4-5). pp. 689-721.

Pitt-Francis, J and Pathmanathan, P. and Bernabeu, M O and Bordas, R and Cooper, J and Fletcher, A G and Mirams, G R and Murray, P J and Osbourne, J and Walter, A and Chapman, S. J. and Garny, A. and van Leeuwen, I. M. M. and Maini, P. K. and Rodriguez, B and Waters, S. L. and Whiteley, J. P. and Byrne, H. M. and Gavaghan, D. J. (2009) Chaste: a test-driven approach to software development for biological modelling. Computer Physics Communications, 180 (12). pp. 2452-2471.

Pitt-Francis, J and Pathmanathan, P. and Bernabeu, M O and Bordas, R and Cooper, J and Fletcher, A G and Mirams, G R and Murray, P J and Osbourne, J and Walter, A and Chapman, S. J. and Garny, A. and van Leeuwen, I. M. M. and Maini, P. K. and Rodriguez, B and Whiteley, J. P. and Byrne, H. M. and Gavaghan, D. J. (2009) Chaste: a test-driven approach to software development for physiological modelling. Not specified . (Submitted)

van Leeuwen, I. M. M. and Mirams, G R and Walter, A and Fletcher, A G and Murray, P J and Osbourne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation, 42 (5). pp. 617-636.

Leeuwen, I M M and Mirams, G R and Walter, A and Fletcher, A and Murray, P J and Osborne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation .

Green, J E F and Waters, S. L. and Shakesheff, K M and Byrne, H. M. (2009) A Mathematical Model of Liver Cell Aggregation In Vitro. Bulletin of Mathematical Biology .

van Leeuwen, I. M. M. and Byrne, H. M. and Johnston, M. D. and Edwards, C. M. and Chapman, S. J. and Bodmer, W. F. and Maini, P. K. (2008) Modelling multiscale aspects of colorectal cancer. AIP Conference Proceedings, 971 (1). pp. 3-7.

Byrne, H. M. and van Leeuwen, I. M. M. and Owen, M. R. and Alarcon, T. and Maini, P. K. (2008) Multiscale modelling of solid tumour growth. In: Selected Topics in Cancer Modeling. Genesis, Evolution, Immune Competition, & Therapy, n/a (n/a). Birkhauser, Boston, USA, pp. 449-473. ISBN 978-0-8176-4712-4

Panovska, J. and Byrne, H. M. and Maini, P. K. (2008) A theoretical study of the response of vascular tumours to different types of chemotherapy. Mathematical and Computer Modelling, 47 (5-6). pp. 560-579.

O'Dea, R. D. and Waters, S. L. and Byrne, H. M. (2008) A two-fluid model for tissue growth within
a dynamic flow environment.
Euro. Jnl of Applied Mathematics .

Panovska, J. and Byrne, H. M. and Maini, P. K. (2007) Mathematical modelling of vascular tumour growth and implications for therapy. In: Mathematical Modeling of Biological Systems. Modeling and Simulation in Science, Engineering and Technology, I (n/a). Birkhauser, Boston, pp. 205-216. ISBN n/a

Stamper, I. J. and Byrne, H. M. and Maini, P. K. (2007) Modelling the role of angiogenesis and vasculogenesis in solid tumuour growth. Bulletin of Mathematical Biology, 69 (8). pp. 2737-2772. ISSN n/a

Maini, P. K. and Alarcon, T. and Byrne, H. M. and Owen, M. R. and Murphy, J. (2007) Structural adaptation in normal and cancerous vasculature. In: In: MathEverywhere: Deterministic and Stochastic Modelling in Biomedicine, Economics and Industry. Springer, Berlin, Germany, pp. 165-178. ISBN 3-540-44445-9

Maini, P. K. and Alarcon, T. and Byrne, H. M. and Owen, M. R. and Murphy, J. (2007) Structural adaptation in normal and cancerous vasculature. In: In: MathEverywhere: Deterministic and Stochastic Modelling in Biomedicine, Economics and Industry. Springer, Berlin, Germany, pp. 165-178. ISBN 3-540-44445-9

Maini, P. K. and Alarcon, T. and Byrne, H. M. and Owen, M. R. and Murphy, J. (2007) Structural adaptation in normal and cancerous vasculature. In: In: MathEverywhere: Deterministic and Stochastic Modelling in Biomedicine, Economics and Industry. Springer, Berlin, Germany, pp. 165-178. ISBN 3-540-44445-9

Betteridge, R. and Owen, M. R. and Byrne, H. M. and Alarcon, T. and Maini, P. K. (2006) The impact of cell crowding and active cell movement on vascular tumour growth. Networks and Heterogeneous Media, 1 (4). pp. 515-535.

Byrne, H. M. and Owen, M. R. and Alarcon, T. and Murphy, J. and Maini, P. K. (2006) Modelling the response of vascular tumours to chemotherapy: A multiscale approach. Mathematical Models and Methods in Applied Sciences, 16 (7S). pp. 1219-1241.

Byrne, H. M. and Alarcon, T. and Owen, M. R. and Webb, S. D. and Maini, P. K. (2006) Modelling aspects of cancer dynamics: a review. Philosophical Transactions of the Royal Society A, 364 (1843). pp. 1563-1578.

Alarcon, T. and Owen, M. R. and Byrne, H. M. and Maini, P. K. (2006) Multiscale modelling of tumour growth and therapy: the influence of vessel normalisation on chemotherapy. Computational & Mathematical Methods in Medicine, 7 (2-3). pp. 85-119.

Byrne, H. M. and Owen, M. R. and Alarcon, T. and Maini, P. K. (2006) Cancer disease: integrative modelling approaches. 3rd IEEE International Symposium on Biomedical Imaging (1). pp. 806-809.

Marchant, Ben P. and Norbury, John and Byrne, H. M. (2006) Biphasic behaviour in malignant invasion. Mathematical Medicine and Biology, 23 (3). pp. 173-196.

Alarcon, T. and Byrne, H. M. and Maini, P. K. and Panovska, J. (2006) Mathematical modelling of angiogenesis and vascular adaptation. In, Multidisciplinary Approaches to the Theory of Medicine, R. Paton and L.A. McNamara (eds) Studies in Multidisciplinarity,, 3 . pp. 369-387.

Maini, P. K. and Alarcon, T. and Byrne, H. M. (2006) Modelling aspects of vascular cancer development. Proceedings of the International Symposium on Mathematical and Computational Biology, R.P. Mondaini and R. Dilao (eds), World Scientific . 1 -12.

Byrne, H. M. and Alarcon, T. and Maini, P. K. (2005) Cancer modelling: Getting to the heart of the problem. Journal of Physiology, 561P, SA9 . 4P.

Alarcon, T. and Byrne, H. M. and Maini, P. K. (2005) A design principle for vascular beds: the effects of complex blood rheology. Microvascular Research, 69 (3). pp. 156-172.

Alarcon, T. and Byrne, H. M. and Maini, P. K. (2005) A multiple scale model for tumor growth. Multiscale Model Simulation, 3 (2). pp. 440-475.

Alarcon, T. and Byrne, H. M. and Maini, P. K. (2004) A mathematical model of the effects of hypoxia on the cell-cycle of normal and cancer cells. Journal of theoretical Biology, 229 (3). pp. 395-411.

Alarcon, T. and Byrne, H. M. and Maini, P. K. (2004) Towards whole-organ modelling of tumour growth. Progress in Biophysics and Molecular Biology, 85 (2-3). pp. 451-472.

Alarcon, T. and Byrne, H. M. and Maini, P. K. (2003) A cellular automaton model for tumour growth in inhomogeneous environment. Journal of Theoretical Biology, 225 (2). pp. 257-274.

Breward, C. J. W. and Byrne, H. M. and Lewis, C. E. (2003) A multiphase model describing vascular tumour growth. Bulletin of Mathematical Biology, 65 . pp. 609-640.

Breward, C. J. W. and Byrne, H. M. and Lewis, C. E. (2002) The role of cell-cell interactions in a two-phase model for avascular tumour growth. Journal of Mathematical Biology, 45 (2). pp. 125-152.

Cascante, M

Drasdo, D and Fell, D and Ferrell, J and Gallahan, D and Gatenby, R. A. and Guenther, U and Herzel, H. and Junghanss, C and Kunz, M and Laplace, F and van Leeuwen, I. M. M. and Lenormand, P and Levi, F and Linnebacher, M and Lowengrub, J and Maini, P. K. and Marcus, F and Malik, A and Rateitschak, K and Sansom, O and Schafer, R and Schurrle, K and Sers, C and Schnell, S. and Harms, B and Shibata, D and Tyson, J and Vera, J and White, M and Zhivotovsky, B and Jaster, R and Wolkenhauer, O and Auffray, C and Baltrusch, S and Bluthgen, N and Byrne, H. M. and Cascante, M and Ciliberto, A and Dale, T (2010) Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research, 70 (1). pp. 12-13.

Chapman, S

Pitt-Francis, J and Pathmanathan, P. and Bernabeu, M O and Bordas, R and Cooper, J and Fletcher, A G and Mirams, G R and Murray, P J and Osbourne, J and Walter, A and Chapman, S. J. and Garny, A. and van Leeuwen, I. M. M. and Maini, P. K. and Rodriguez, B and Waters, S. L. and Whiteley, J. P. and Byrne, H. M. and Gavaghan, D. J. (2009) Chaste: a test-driven approach to software development for biological modelling. Computer Physics Communications, 180 (12). pp. 2452-2471.

Pitt-Francis, J and Pathmanathan, P. and Bernabeu, M O and Bordas, R and Cooper, J and Fletcher, A G and Mirams, G R and Murray, P J and Osbourne, J and Walter, A and Chapman, S. J. and Garny, A. and van Leeuwen, I. M. M. and Maini, P. K. and Rodriguez, B and Whiteley, J. P. and Byrne, H. M. and Gavaghan, D. J. (2009) Chaste: a test-driven approach to software development for physiological modelling. Not specified . (Submitted)

van Leeuwen, I. M. M. and Mirams, G R and Walter, A and Fletcher, A G and Murray, P J and Osbourne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation, 42 (5). pp. 617-636.

Leeuwen, I M M and Mirams, G R and Walter, A and Fletcher, A and Murray, P J and Osborne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation .

van Leeuwen, I. M. M. and Byrne, H. M. and Johnston, M. D. and Edwards, C. M. and Chapman, S. J. and Bodmer, W. F. and Maini, P. K. (2008) Modelling multiscale aspects of colorectal cancer. AIP Conference Proceedings, 971 (1). pp. 3-7.

Chen, T

Perfahl, H and Byrne, H. M. and Chen, T and Estrella, V and Alarcon, T. and Lapin, A and Gatenby, R. A. and Gillies, R. J. and Lloyd, M C and Maini, P. K. and Reuss, M and Owen, M. R. (2013) 3D Multiscale modelling of angiogenesis and vascular tumour growth. In: Micro and Nano Flow Systems Flow Systems for Bioanalysis. Bioanalysis, 2 . Springer, New York, pp. 29-48.

Perfahl, H and Byrne, H. M. and Chen, T and Estrella, V and Alarcon, T. and Lapin, A and Gatenby, R. A. and Gilles, R and Lloyd, M C and Maini, P. K. and Reuss, M and Owen, M. R. (2011) Multiscale modelling of vascular tumour growth in 3D: the roles of domain size & boundary condition. PLOs One, 6 (4). 17 pages.

Cho, K

Murray, P J and Kang, J W and Mirams, G R and Shin, S Y and Byrne, H. M. and Maini, P. K. and Cho, K H (2010) Modelling spatially regulated B-catenin dynamics & invasion in intestinal crypts. Biophysical Journal , 99 (3). pp. 716-725.

Ciliberto, A

Drasdo, D and Fell, D and Ferrell, J and Gallahan, D and Gatenby, R. A. and Guenther, U and Herzel, H. and Junghanss, C and Kunz, M and Laplace, F and van Leeuwen, I. M. M. and Lenormand, P and Levi, F and Linnebacher, M and Lowengrub, J and Maini, P. K. and Marcus, F and Malik, A and Rateitschak, K and Sansom, O and Schafer, R and Schurrle, K and Sers, C and Schnell, S. and Harms, B and Shibata, D and Tyson, J and Vera, J and White, M and Zhivotovsky, B and Jaster, R and Wolkenhauer, O and Auffray, C and Baltrusch, S and Bluthgen, N and Byrne, H. M. and Cascante, M and Ciliberto, A and Dale, T (2010) Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research, 70 (1). pp. 12-13.

Clements, J

Loessner, D. and Flegg, J. A. and Byrne, H. M. and Hall, C. L. and Moroney, T. J. and Clements, J. A. and McElwain, D. L. S. and Hutmacher, D. W. (2011) Growth of confined cancer spheroids: a combined experimental and mathematical modelling approach. Integrative Biology . (Submitted)

Loessner, D. and Flegg, J. A. and Byrne, H. M. and Hall, C. L. and Moroney, T. J. and Clements, J. A. and Hutmacher, D. W. and McElwain, D. L. S. (2010) Modeling the growth of multicellular cancer spheroids in a
bioengineered 3D microenvironment and their treatment with an
anti-cancer drug.
PLoS Computational Biology . (Submitted)

Connor, A

Connor, A. J. and Cooper, J. and Byrne, H. M. and Maini, P. K. and McKeever, S. (2012) Object-Oriented Paradigms for Modelling Vascular
Tumour Growth: a Case Study.
In: SIMUL2012. (Submitted)

Connor, A. J. and Cooper, J and Byrne, H. M. and Maini, P. K. and McKeever, S. (2012) Object-oriented paradigms for modelling vascular tumor growth: a case study. In: The Fourth International Conference on Advances in Systems Simulation. Simul 2012 . Iaria, Lisbon, pp. 74-83.

Cooper, J

Connor, A. J. and Cooper, J. and Byrne, H. M. and Maini, P. K. and McKeever, S. (2012) Object-Oriented Paradigms for Modelling Vascular
Tumour Growth: a Case Study.
In: SIMUL2012. (Submitted)

Connor, A. J. and Cooper, J and Byrne, H. M. and Maini, P. K. and McKeever, S. (2012) Object-oriented paradigms for modelling vascular tumor growth: a case study. In: The Fourth International Conference on Advances in Systems Simulation. Simul 2012 . Iaria, Lisbon, pp. 74-83.

Pitt-Francis, J and Pathmanathan, P. and Bernabeu, M O and Bordas, R and Cooper, J and Fletcher, A G and Mirams, G R and Murray, P J and Osbourne, J and Walter, A and Chapman, S. J. and Garny, A. and van Leeuwen, I. M. M. and Maini, P. K. and Rodriguez, B and Waters, S. L. and Whiteley, J. P. and Byrne, H. M. and Gavaghan, D. J. (2009) Chaste: a test-driven approach to software development for biological modelling. Computer Physics Communications, 180 (12). pp. 2452-2471.

Pitt-Francis, J and Pathmanathan, P. and Bernabeu, M O and Bordas, R and Cooper, J and Fletcher, A G and Mirams, G R and Murray, P J and Osbourne, J and Walter, A and Chapman, S. J. and Garny, A. and van Leeuwen, I. M. M. and Maini, P. K. and Rodriguez, B and Whiteley, J. P. and Byrne, H. M. and Gavaghan, D. J. (2009) Chaste: a test-driven approach to software development for physiological modelling. Not specified . (Submitted)

van Leeuwen, I. M. M. and Mirams, G R and Walter, A and Fletcher, A G and Murray, P J and Osbourne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation, 42 (5). pp. 617-636.

Leeuwen, I M M and Mirams, G R and Walter, A and Fletcher, A and Murray, P J and Osborne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation .

Dale, T

Drasdo, D and Fell, D and Ferrell, J and Gallahan, D and Gatenby, R. A. and Guenther, U and Herzel, H. and Junghanss, C and Kunz, M and Laplace, F and van Leeuwen, I. M. M. and Lenormand, P and Levi, F and Linnebacher, M and Lowengrub, J and Maini, P. K. and Marcus, F and Malik, A and Rateitschak, K and Sansom, O and Schafer, R and Schurrle, K and Sers, C and Schnell, S. and Harms, B and Shibata, D and Tyson, J and Vera, J and White, M and Zhivotovsky, B and Jaster, R and Wolkenhauer, O and Auffray, C and Baltrusch, S and Bluthgen, N and Byrne, H. M. and Cascante, M and Ciliberto, A and Dale, T (2010) Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research, 70 (1). pp. 12-13.

Davit, Y

Davit, Y. and Byrne, H. M. and Osborne, J. M. and Pitt-Francis, J. M. and Gavaghan, D. J. and Quintard, M. (2012) Solute transport within porous biofilms: diffusion or dispersion? Physical Review E . (Submitted)

Davit, Y. and Osborne, J. M. and Byrne, H. M. and Gavaghan, D. J. and Pitt-Francis, J. M. (2012) Validity of the Cauchy-Born rule applied to discrete cellular-scale models of biological tissues. Physical Review E . (Submitted)

Dinnyés, A

Lovrics, A. and Yu, G. and Juhász, B. and Bock, I. and Byrne, H. M. and Dinnyés, A. and Kovács, K. A. (2012) Boolean modelling reveals new regulatory connections between transcription factors orchestrating the development of the ventral spinal cord. Journal of the Royal Society Interface . (Submitted)

Doyle, B

van Leeuwen, I. M. M. and Mirams, G R and Walter, A and Fletcher, A G and Murray, P J and Osbourne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation, 42 (5). pp. 617-636.

Leeuwen, I M M and Mirams, G R and Walter, A and Fletcher, A and Murray, P J and Osborne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation .

Drasdo, D

Drasdo, D and Fell, D and Ferrell, J and Gallahan, D and Gatenby, R. A. and Guenther, U and Herzel, H. and Junghanss, C and Kunz, M and Laplace, F and van Leeuwen, I. M. M. and Lenormand, P and Levi, F and Linnebacher, M and Lowengrub, J and Maini, P. K. and Marcus, F and Malik, A and Rateitschak, K and Sansom, O and Schafer, R and Schurrle, K and Sers, C and Schnell, S. and Harms, B and Shibata, D and Tyson, J and Vera, J and White, M and Zhivotovsky, B and Jaster, R and Wolkenhauer, O and Auffray, C and Baltrusch, S and Bluthgen, N and Byrne, H. M. and Cascante, M and Ciliberto, A and Dale, T (2010) Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research, 70 (1). pp. 12-13.

Edwards, C

van Leeuwen, I. M. M. and Byrne, H. M. and Johnston, M. D. and Edwards, C. M. and Chapman, S. J. and Bodmer, W. F. and Maini, P. K. (2008) Modelling multiscale aspects of colorectal cancer. AIP Conference Proceedings, 971 (1). pp. 3-7.

El Haj, A

O'Dea, R. D. and Osborne, J. M. and El Haj, A. J. and Byrne, H. M. and Waters, S. L. (2012) The interplay between tissue growth and scaffold degradation in engineered tissue constructs. Journal of Mathematical Biology . (Submitted)

Estrella, V

Perfahl, H and Byrne, H. M. and Chen, T and Estrella, V and Alarcon, T. and Lapin, A and Gatenby, R. A. and Gillies, R. J. and Lloyd, M C and Maini, P. K. and Reuss, M and Owen, M. R. (2013) 3D Multiscale modelling of angiogenesis and vascular tumour growth. In: Micro and Nano Flow Systems Flow Systems for Bioanalysis. Bioanalysis, 2 . Springer, New York, pp. 29-48.

Perfahl, H and Byrne, H. M. and Chen, T and Estrella, V and Alarcon, T. and Lapin, A and Gatenby, R. A. and Gilles, R and Lloyd, M C and Maini, P. K. and Reuss, M and Owen, M. R. (2011) Multiscale modelling of vascular tumour growth in 3D: the roles of domain size & boundary condition. PLOs One, 6 (4). 17 pages.

Fell, D

Drasdo, D and Fell, D and Ferrell, J and Gallahan, D and Gatenby, R. A. and Guenther, U and Herzel, H. and Junghanss, C and Kunz, M and Laplace, F and van Leeuwen, I. M. M. and Lenormand, P and Levi, F and Linnebacher, M and Lowengrub, J and Maini, P. K. and Marcus, F and Malik, A and Rateitschak, K and Sansom, O and Schafer, R and Schurrle, K and Sers, C and Schnell, S. and Harms, B and Shibata, D and Tyson, J and Vera, J and White, M and Zhivotovsky, B and Jaster, R and Wolkenhauer, O and Auffray, C and Baltrusch, S and Bluthgen, N and Byrne, H. M. and Cascante, M and Ciliberto, A and Dale, T (2010) Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research, 70 (1). pp. 12-13.

Ferrell, J

Drasdo, D and Fell, D and Ferrell, J and Gallahan, D and Gatenby, R. A. and Guenther, U and Herzel, H. and Junghanss, C and Kunz, M and Laplace, F and van Leeuwen, I. M. M. and Lenormand, P and Levi, F and Linnebacher, M and Lowengrub, J and Maini, P. K. and Marcus, F and Malik, A and Rateitschak, K and Sansom, O and Schafer, R and Schurrle, K and Sers, C and Schnell, S. and Harms, B and Shibata, D and Tyson, J and Vera, J and White, M and Zhivotovsky, B and Jaster, R and Wolkenhauer, O and Auffray, C and Baltrusch, S and Bluthgen, N and Byrne, H. M. and Cascante, M and Ciliberto, A and Dale, T (2010) Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research, 70 (1). pp. 12-13.

Figueredo, G

Figueredo, G. and Joshi, T. and Osborne, J. and Byrne, H. M. and Owen, M. (2012) On-lattice agent-based simulation of populations of cells within the open-source chaste framework. Interface Focus . (Submitted)

Flegg, J

Loessner, D. and Flegg, J. A. and Byrne, H. M. and Hall, C. L. and Moroney, T. J. and Clements, J. A. and McElwain, D. L. S. and Hutmacher, D. W. (2011) Growth of confined cancer spheroids: a combined experimental and mathematical modelling approach. Integrative Biology . (Submitted)

Flegg, J. A. and Byrne, H. M. and Flegg, M. B. and McElwain, D. L. S. (2011) Wound healing angiogenesis the clinical implications of a simple mathematical model. Journal of Theoretical Biology . (Submitted)

Loessner, D. and Flegg, J. A. and Byrne, H. M. and Hall, C. L. and Moroney, T. J. and Clements, J. A. and Hutmacher, D. W. and McElwain, D. L. S. (2010) Modeling the growth of multicellular cancer spheroids in a
bioengineered 3D microenvironment and their treatment with an
anti-cancer drug.
PLoS Computational Biology . (Submitted)

Flegg, M

Flegg, J. A. and Byrne, H. M. and Flegg, M. B. and McElwain, D. L. S. (2011) Wound healing angiogenesis the clinical implications of a simple mathematical model. Journal of Theoretical Biology . (Submitted)

Fletcher, A

Mirams, G R and Fletcher, A G and Maini, P. K. and Byrne, H. M. (2012) A theoretical investigation of the effect of proliferation & adhesion on monoclonal conversion in the colonic crypt. Journal of Theoretical Biology, 312 (2). pp. 143-156.

Mirams, G R and Fletcher, A G and Maini, P. K. and Byrne, H. M. (2012) A theoretical investigation of the effect of proliferation and
adhesion on monoclonal conversion in the colonic crypt.
Journal of Theoretical Biology . (Submitted)

Osborne, J and Walter, A and Kershaw, S. K. and Mirams, G R and Fletcher, A G and Pathmanathan, P. and Gavaghan, D. J. and Jensen, O E and Maini, P. K. and Byrne, H. M. (2010) A hybrid approach to multi-scale modelling of cancer. Philosophical Transactions of the Royal Society A, 368 (1930). pp. 5013-5028. ISSN 0962-8428

Pitt-Francis, J and Pathmanathan, P. and Bernabeu, M O and Bordas, R and Cooper, J and Fletcher, A G and Mirams, G R and Murray, P J and Osbourne, J and Walter, A and Chapman, S. J. and Garny, A. and van Leeuwen, I. M. M. and Maini, P. K. and Rodriguez, B and Waters, S. L. and Whiteley, J. P. and Byrne, H. M. and Gavaghan, D. J. (2009) Chaste: a test-driven approach to software development for biological modelling. Computer Physics Communications, 180 (12). pp. 2452-2471.

Pitt-Francis, J and Pathmanathan, P. and Bernabeu, M O and Bordas, R and Cooper, J and Fletcher, A G and Mirams, G R and Murray, P J and Osbourne, J and Walter, A and Chapman, S. J. and Garny, A. and van Leeuwen, I. M. M. and Maini, P. K. and Rodriguez, B and Whiteley, J. P. and Byrne, H. M. and Gavaghan, D. J. (2009) Chaste: a test-driven approach to software development for physiological modelling. Not specified . (Submitted)

van Leeuwen, I. M. M. and Mirams, G R and Walter, A and Fletcher, A G and Murray, P J and Osbourne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation, 42 (5). pp. 617-636.

Leeuwen, I M M and Mirams, G R and Walter, A and Fletcher, A and Murray, P J and Osborne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation .

Gallahan, D

Drasdo, D and Fell, D and Ferrell, J and Gallahan, D and Gatenby, R. A. and Guenther, U and Herzel, H. and Junghanss, C and Kunz, M and Laplace, F and van Leeuwen, I. M. M. and Lenormand, P and Levi, F and Linnebacher, M and Lowengrub, J and Maini, P. K. and Marcus, F and Malik, A and Rateitschak, K and Sansom, O and Schafer, R and Schurrle, K and Sers, C and Schnell, S. and Harms, B and Shibata, D and Tyson, J and Vera, J and White, M and Zhivotovsky, B and Jaster, R and Wolkenhauer, O and Auffray, C and Baltrusch, S and Bluthgen, N and Byrne, H. M. and Cascante, M and Ciliberto, A and Dale, T (2010) Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research, 70 (1). pp. 12-13.

Garny, A

Pitt-Francis, J and Pathmanathan, P. and Bernabeu, M O and Bordas, R and Cooper, J and Fletcher, A G and Mirams, G R and Murray, P J and Osbourne, J and Walter, A and Chapman, S. J. and Garny, A. and van Leeuwen, I. M. M. and Maini, P. K. and Rodriguez, B and Waters, S. L. and Whiteley, J. P. and Byrne, H. M. and Gavaghan, D. J. (2009) Chaste: a test-driven approach to software development for biological modelling. Computer Physics Communications, 180 (12). pp. 2452-2471.

Pitt-Francis, J and Pathmanathan, P. and Bernabeu, M O and Bordas, R and Cooper, J and Fletcher, A G and Mirams, G R and Murray, P J and Osbourne, J and Walter, A and Chapman, S. J. and Garny, A. and van Leeuwen, I. M. M. and Maini, P. K. and Rodriguez, B and Whiteley, J. P. and Byrne, H. M. and Gavaghan, D. J. (2009) Chaste: a test-driven approach to software development for physiological modelling. Not specified . (Submitted)

Gatenby, R

Perfahl, H and Byrne, H. M. and Chen, T and Estrella, V and Alarcon, T. and Lapin, A and Gatenby, R. A. and Gillies, R. J. and Lloyd, M C and Maini, P. K. and Reuss, M and Owen, M. R. (2013) 3D Multiscale modelling of angiogenesis and vascular tumour growth. In: Micro and Nano Flow Systems Flow Systems for Bioanalysis. Bioanalysis, 2 . Springer, New York, pp. 29-48.

Perfahl, H and Byrne, H. M. and Chen, T and Estrella, V and Alarcon, T. and Lapin, A and Gatenby, R. A. and Gilles, R and Lloyd, M C and Maini, P. K. and Reuss, M and Owen, M. R. (2011) Multiscale modelling of vascular tumour growth in 3D: the roles of domain size & boundary condition. PLOs One, 6 (4). 17 pages.

Drasdo, D and Fell, D and Ferrell, J and Gallahan, D and Gatenby, R. A. and Guenther, U and Herzel, H. and Junghanss, C and Kunz, M and Laplace, F and van Leeuwen, I. M. M. and Lenormand, P and Levi, F and Linnebacher, M and Lowengrub, J and Maini, P. K. and Marcus, F and Malik, A and Rateitschak, K and Sansom, O and Schafer, R and Schurrle, K and Sers, C and Schnell, S. and Harms, B and Shibata, D and Tyson, J and Vera, J and White, M and Zhivotovsky, B and Jaster, R and Wolkenhauer, O and Auffray, C and Baltrusch, S and Bluthgen, N and Byrne, H. M. and Cascante, M and Ciliberto, A and Dale, T (2010) Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research, 70 (1). pp. 12-13.

Gavaghan, D

Kershaw, S. K. and Byrne, H. M. and Gavaghan, D. J. and Osborne, J. M. (2012) Colorectal Cancer Through Simulation and Experiment. IET Systems Biology . (Submitted)

Davit, Y. and Byrne, H. M. and Osborne, J. M. and Pitt-Francis, J. M. and Gavaghan, D. J. and Quintard, M. (2012) Solute transport within porous biofilms: diffusion or dispersion? Physical Review E . (Submitted)

Davit, Y. and Osborne, J. M. and Byrne, H. M. and Gavaghan, D. J. and Pitt-Francis, J. M. (2012) Validity of the Cauchy-Born rule applied to discrete cellular-scale models of biological tissues. Physical Review E . (Submitted)

Osborne, J and Walter, A and Kershaw, S. K. and Mirams, G R and Fletcher, A G and Pathmanathan, P. and Gavaghan, D. J. and Jensen, O E and Maini, P. K. and Byrne, H. M. (2010) A hybrid approach to multi-scale modelling of cancer. Philosophical Transactions of the Royal Society A, 368 (1930). pp. 5013-5028. ISSN 0962-8428

Pitt-Francis, J and Pathmanathan, P. and Bernabeu, M O and Bordas, R and Cooper, J and Fletcher, A G and Mirams, G R and Murray, P J and Osbourne, J and Walter, A and Chapman, S. J. and Garny, A. and van Leeuwen, I. M. M. and Maini, P. K. and Rodriguez, B and Waters, S. L. and Whiteley, J. P. and Byrne, H. M. and Gavaghan, D. J. (2009) Chaste: a test-driven approach to software development for biological modelling. Computer Physics Communications, 180 (12). pp. 2452-2471.

Pitt-Francis, J and Pathmanathan, P. and Bernabeu, M O and Bordas, R and Cooper, J and Fletcher, A G and Mirams, G R and Murray, P J and Osbourne, J and Walter, A and Chapman, S. J. and Garny, A. and van Leeuwen, I. M. M. and Maini, P. K. and Rodriguez, B and Whiteley, J. P. and Byrne, H. M. and Gavaghan, D. J. (2009) Chaste: a test-driven approach to software development for physiological modelling. Not specified . (Submitted)

van Leeuwen, I. M. M. and Mirams, G R and Walter, A and Fletcher, A G and Murray, P J and Osbourne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation, 42 (5). pp. 617-636.

Leeuwen, I M M and Mirams, G R and Walter, A and Fletcher, A and Murray, P J and Osborne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation .

Gilles, R

Perfahl, H and Byrne, H. M. and Chen, T and Estrella, V and Alarcon, T. and Lapin, A and Gatenby, R. A. and Gilles, R and Lloyd, M C and Maini, P. K. and Reuss, M and Owen, M. R. (2011) Multiscale modelling of vascular tumour growth in 3D: the roles of domain size & boundary condition. PLOs One, 6 (4). 17 pages.

Gillies, R

Perfahl, H and Byrne, H. M. and Chen, T and Estrella, V and Alarcon, T. and Lapin, A and Gatenby, R. A. and Gillies, R. J. and Lloyd, M C and Maini, P. K. and Reuss, M and Owen, M. R. (2013) 3D Multiscale modelling of angiogenesis and vascular tumour growth. In: Micro and Nano Flow Systems Flow Systems for Bioanalysis. Bioanalysis, 2 . Springer, New York, pp. 29-48.

Green, J

Green, J E F and Waters, S. L. and Shakesheff, K M and Byrne, H. M. (2009) A Mathematical Model of Liver Cell Aggregation In Vitro. Bulletin of Mathematical Biology .

Guenther, U

Drasdo, D and Fell, D and Ferrell, J and Gallahan, D and Gatenby, R. A. and Guenther, U and Herzel, H. and Junghanss, C and Kunz, M and Laplace, F and van Leeuwen, I. M. M. and Lenormand, P and Levi, F and Linnebacher, M and Lowengrub, J and Maini, P. K. and Marcus, F and Malik, A and Rateitschak, K and Sansom, O and Schafer, R and Schurrle, K and Sers, C and Schnell, S. and Harms, B and Shibata, D and Tyson, J and Vera, J and White, M and Zhivotovsky, B and Jaster, R and Wolkenhauer, O and Auffray, C and Baltrusch, S and Bluthgen, N and Byrne, H. M. and Cascante, M and Ciliberto, A and Dale, T (2010) Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research, 70 (1). pp. 12-13.

Hall, C

Loessner, D. and Flegg, J. A. and Byrne, H. M. and Hall, C. L. and Moroney, T. J. and Clements, J. A. and McElwain, D. L. S. and Hutmacher, D. W. (2011) Growth of confined cancer spheroids: a combined experimental and mathematical modelling approach. Integrative Biology . (Submitted)

Loessner, D. and Flegg, J. A. and Byrne, H. M. and Hall, C. L. and Moroney, T. J. and Clements, J. A. and Hutmacher, D. W. and McElwain, D. L. S. (2010) Modeling the growth of multicellular cancer spheroids in a
bioengineered 3D microenvironment and their treatment with an
anti-cancer drug.
PLoS Computational Biology . (Submitted)

Harms, B

Drasdo, D and Fell, D and Ferrell, J and Gallahan, D and Gatenby, R. A. and Guenther, U and Herzel, H. and Junghanss, C and Kunz, M and Laplace, F and van Leeuwen, I. M. M. and Lenormand, P and Levi, F and Linnebacher, M and Lowengrub, J and Maini, P. K. and Marcus, F and Malik, A and Rateitschak, K and Sansom, O and Schafer, R and Schurrle, K and Sers, C and Schnell, S. and Harms, B and Shibata, D and Tyson, J and Vera, J and White, M and Zhivotovsky, B and Jaster, R and Wolkenhauer, O and Auffray, C and Baltrusch, S and Bluthgen, N and Byrne, H. M. and Cascante, M and Ciliberto, A and Dale, T (2010) Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research, 70 (1). pp. 12-13.

Herzel, H

Drasdo, D and Fell, D and Ferrell, J and Gallahan, D and Gatenby, R. A. and Guenther, U and Herzel, H. and Junghanss, C and Kunz, M and Laplace, F and van Leeuwen, I. M. M. and Lenormand, P and Levi, F and Linnebacher, M and Lowengrub, J and Maini, P. K. and Marcus, F and Malik, A and Rateitschak, K and Sansom, O and Schafer, R and Schurrle, K and Sers, C and Schnell, S. and Harms, B and Shibata, D and Tyson, J and Vera, J and White, M and Zhivotovsky, B and Jaster, R and Wolkenhauer, O and Auffray, C and Baltrusch, S and Bluthgen, N and Byrne, H. M. and Cascante, M and Ciliberto, A and Dale, T (2010) Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research, 70 (1). pp. 12-13.

Hodgman, C

Muraro, D. and Voß, U. and Wilson, M. and Bennett, M. and Byrne, H. M. and de Smet, I. and Hodgman, C. and King, J. R. (2012) Inference of the genetic network regulating lateral root initiation in Arabidopsis thaliana. Transactions on Computational Biology and Bioinformatics . (Submitted)

Hubbard, M

Hubbard, M. E. and Byrne, H. M. (2012) Multiphase modelling of vascular tumour growth in two spatial dimensions. Journal of Theoretical Biology . (Submitted)

Hutmacher, D

Loessner, D. and Flegg, J. A. and Byrne, H. M. and Hall, C. L. and Moroney, T. J. and Clements, J. A. and McElwain, D. L. S. and Hutmacher, D. W. (2011) Growth of confined cancer spheroids: a combined experimental and mathematical modelling approach. Integrative Biology . (Submitted)

Loessner, D. and Flegg, J. A. and Byrne, H. M. and Hall, C. L. and Moroney, T. J. and Clements, J. A. and Hutmacher, D. W. and McElwain, D. L. S. (2010) Modeling the growth of multicellular cancer spheroids in a
bioengineered 3D microenvironment and their treatment with an
anti-cancer drug.
PLoS Computational Biology . (Submitted)

Jain, H

Jain, H. V. and Richardson, A. and Meyer-Hermann, M. E. and Byrne, H. M. (2012) Exploiting the synergy between carboplatin and ABT-737 in the treatment of ovarian carcinomas. Cancer Research . (Submitted)

Jain, H. V. and Moldovan, N. I. and Byrne, H. M. (2012) Modeling Stem/Progenitor Cell-Induced Neovascularization and
Oxygenation around Solid Implants.
Tissue Engineering Part C . (Submitted)

Jain, H. V. and Byrne, H. M. (2012) Qualitative Analysis of an Integro-Differential Equation Model of Periodic Chemotherapy. Applied Maths Letters . (Submitted)

Jaster, R

Drasdo, D and Fell, D and Ferrell, J and Gallahan, D and Gatenby, R. A. and Guenther, U and Herzel, H. and Junghanss, C and Kunz, M and Laplace, F and van Leeuwen, I. M. M. and Lenormand, P and Levi, F and Linnebacher, M and Lowengrub, J and Maini, P. K. and Marcus, F and Malik, A and Rateitschak, K and Sansom, O and Schafer, R and Schurrle, K and Sers, C and Schnell, S. and Harms, B and Shibata, D and Tyson, J and Vera, J and White, M and Zhivotovsky, B and Jaster, R and Wolkenhauer, O and Auffray, C and Baltrusch, S and Bluthgen, N and Byrne, H. M. and Cascante, M and Ciliberto, A and Dale, T (2010) Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research, 70 (1). pp. 12-13.

Jeffrey, M

Sotiris, A. and Prokopiou, S. A. and Byrne, H. M. and Jeffrey, M. R. and Robinson, R. S. and Mann, G. E. and Owen, M. R. (2013) Mathematical analysis of a model for the growth of the bovine corpus luteum. Journal of Mathematical Biology . (Submitted)

Jensen, O

Osborne, J and Walter, A and Kershaw, S. K. and Mirams, G R and Fletcher, A G and Pathmanathan, P. and Gavaghan, D. J. and Jensen, O E and Maini, P. K. and Byrne, H. M. (2010) A hybrid approach to multi-scale modelling of cancer. Philosophical Transactions of the Royal Society A, 368 (1930). pp. 5013-5028. ISSN 0962-8428

van Leeuwen, I. M. M. and Mirams, G R and Walter, A and Fletcher, A G and Murray, P J and Osbourne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation, 42 (5). pp. 617-636.

Leeuwen, I M M and Mirams, G R and Walter, A and Fletcher, A and Murray, P J and Osborne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation .

Johnston, M

van Leeuwen, I. M. M. and Byrne, H. M. and Johnston, M. D. and Edwards, C. M. and Chapman, S. J. and Bodmer, W. F. and Maini, P. K. (2008) Modelling multiscale aspects of colorectal cancer. AIP Conference Proceedings, 971 (1). pp. 3-7.

Joshi, T

Figueredo, G. and Joshi, T. and Osborne, J. and Byrne, H. M. and Owen, M. (2012) On-lattice agent-based simulation of populations of cells within the open-source chaste framework. Interface Focus . (Submitted)

Juhász, B

Lovrics, A. and Yu, G. and Juhász, B. and Bock, I. and Byrne, H. M. and Dinnyés, A. and Kovács, K. A. (2012) Boolean modelling reveals new regulatory connections between transcription factors orchestrating the development of the ventral spinal cord. Journal of the Royal Society Interface . (Submitted)

Junghanss, C

Drasdo, D and Fell, D and Ferrell, J and Gallahan, D and Gatenby, R. A. and Guenther, U and Herzel, H. and Junghanss, C and Kunz, M and Laplace, F and van Leeuwen, I. M. M. and Lenormand, P and Levi, F and Linnebacher, M and Lowengrub, J and Maini, P. K. and Marcus, F and Malik, A and Rateitschak, K and Sansom, O and Schafer, R and Schurrle, K and Sers, C and Schnell, S. and Harms, B and Shibata, D and Tyson, J and Vera, J and White, M and Zhivotovsky, B and Jaster, R and Wolkenhauer, O and Auffray, C and Baltrusch, S and Bluthgen, N and Byrne, H. M. and Cascante, M and Ciliberto, A and Dale, T (2010) Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research, 70 (1). pp. 12-13.

Kang, J

Murray, P J and Kang, J W and Mirams, G R and Shin, S Y and Byrne, H. M. and Maini, P. K. and Cho, K H (2010) Modelling spatially regulated B-catenin dynamics & invasion in intestinal crypts. Biophysical Journal , 99 (3). pp. 716-725.

Kershaw, S

Kershaw, S. K. and Byrne, H. M. and Gavaghan, D. J. and Osborne, J. M. (2012) Colorectal Cancer Through Simulation and Experiment. IET Systems Biology . (Submitted)

Osborne, J and Walter, A and Kershaw, S. K. and Mirams, G R and Fletcher, A G and Pathmanathan, P. and Gavaghan, D. J. and Jensen, O E and Maini, P. K. and Byrne, H. M. (2010) A hybrid approach to multi-scale modelling of cancer. Philosophical Transactions of the Royal Society A, 368 (1930). pp. 5013-5028. ISSN 0962-8428

King, J

Muraro, D. and Voß, U. and Wilson, M. and Bennett, M. and Byrne, H. M. and de Smet, I. and Hodgman, C. and King, J. R. (2012) Inference of the genetic network regulating lateral root initiation in Arabidopsis thaliana. Transactions on Computational Biology and Bioinformatics . (Submitted)

Muraro, D. and Byrne, H. M. and King, J. R. and Bennett, M. J. (2012) Mathematical modelling plant signalling networks. Mathematical Modelling of Natural Phenomena . (Submitted)

van Leeuwen, I. M. M. and Mirams, G R and Walter, A and Fletcher, A G and Murray, P J and Osbourne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation, 42 (5). pp. 617-636.

Leeuwen, I M M and Mirams, G R and Walter, A and Fletcher, A and Murray, P J and Osborne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation .

Kovács, K

Lovrics, A. and Yu, G. and Juhász, B. and Bock, I. and Byrne, H. M. and Dinnyés, A. and Kovács, K. A. (2012) Boolean modelling reveals new regulatory connections between transcription factors orchestrating the development of the ventral spinal cord. Journal of the Royal Society Interface . (Submitted)

Kunz, M

Drasdo, D and Fell, D and Ferrell, J and Gallahan, D and Gatenby, R. A. and Guenther, U and Herzel, H. and Junghanss, C and Kunz, M and Laplace, F and van Leeuwen, I. M. M. and Lenormand, P and Levi, F and Linnebacher, M and Lowengrub, J and Maini, P. K. and Marcus, F and Malik, A and Rateitschak, K and Sansom, O and Schafer, R and Schurrle, K and Sers, C and Schnell, S. and Harms, B and Shibata, D and Tyson, J and Vera, J and White, M and Zhivotovsky, B and Jaster, R and Wolkenhauer, O and Auffray, C and Baltrusch, S and Bluthgen, N and Byrne, H. M. and Cascante, M and Ciliberto, A and Dale, T (2010) Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research, 70 (1). pp. 12-13.

Lapin, A

Perfahl, H and Byrne, H. M. and Chen, T and Estrella, V and Alarcon, T. and Lapin, A and Gatenby, R. A. and Gillies, R. J. and Lloyd, M C and Maini, P. K. and Reuss, M and Owen, M. R. (2013) 3D Multiscale modelling of angiogenesis and vascular tumour growth. In: Micro and Nano Flow Systems Flow Systems for Bioanalysis. Bioanalysis, 2 . Springer, New York, pp. 29-48.

Perfahl, H and Byrne, H. M. and Chen, T and Estrella, V and Alarcon, T. and Lapin, A and Gatenby, R. A. and Gilles, R and Lloyd, M C and Maini, P. K. and Reuss, M and Owen, M. R. (2011) Multiscale modelling of vascular tumour growth in 3D: the roles of domain size & boundary condition. PLOs One, 6 (4). 17 pages.

Laplace, F

Drasdo, D and Fell, D and Ferrell, J and Gallahan, D and Gatenby, R. A. and Guenther, U and Herzel, H. and Junghanss, C and Kunz, M and Laplace, F and van Leeuwen, I. M. M. and Lenormand, P and Levi, F and Linnebacher, M and Lowengrub, J and Maini, P. K. and Marcus, F and Malik, A and Rateitschak, K and Sansom, O and Schafer, R and Schurrle, K and Sers, C and Schnell, S. and Harms, B and Shibata, D and Tyson, J and Vera, J and White, M and Zhivotovsky, B and Jaster, R and Wolkenhauer, O and Auffray, C and Baltrusch, S and Bluthgen, N and Byrne, H. M. and Cascante, M and Ciliberto, A and Dale, T (2010) Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research, 70 (1). pp. 12-13.

Leeuwen, I

Leeuwen, I M M and Mirams, G R and Walter, A and Fletcher, A and Murray, P J and Osborne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation .

Lenormand, P

Drasdo, D and Fell, D and Ferrell, J and Gallahan, D and Gatenby, R. A. and Guenther, U and Herzel, H. and Junghanss, C and Kunz, M and Laplace, F and van Leeuwen, I. M. M. and Lenormand, P and Levi, F and Linnebacher, M and Lowengrub, J and Maini, P. K. and Marcus, F and Malik, A and Rateitschak, K and Sansom, O and Schafer, R and Schurrle, K and Sers, C and Schnell, S. and Harms, B and Shibata, D and Tyson, J and Vera, J and White, M and Zhivotovsky, B and Jaster, R and Wolkenhauer, O and Auffray, C and Baltrusch, S and Bluthgen, N and Byrne, H. M. and Cascante, M and Ciliberto, A and Dale, T (2010) Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research, 70 (1). pp. 12-13.

Levi, F

Drasdo, D and Fell, D and Ferrell, J and Gallahan, D and Gatenby, R. A. and Guenther, U and Herzel, H. and Junghanss, C and Kunz, M and Laplace, F and van Leeuwen, I. M. M. and Lenormand, P and Levi, F and Linnebacher, M and Lowengrub, J and Maini, P. K. and Marcus, F and Malik, A and Rateitschak, K and Sansom, O and Schafer, R and Schurrle, K and Sers, C and Schnell, S. and Harms, B and Shibata, D and Tyson, J and Vera, J and White, M and Zhivotovsky, B and Jaster, R and Wolkenhauer, O and Auffray, C and Baltrusch, S and Bluthgen, N and Byrne, H. M. and Cascante, M and Ciliberto, A and Dale, T (2010) Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research, 70 (1). pp. 12-13.

Lewis, C

Breward, C. J. W. and Byrne, H. M. and Lewis, C. E. (2003) A multiphase model describing vascular tumour growth. Bulletin of Mathematical Biology, 65 . pp. 609-640.

Breward, C. J. W. and Byrne, H. M. and Lewis, C. E. (2002) The role of cell-cell interactions in a two-phase model for avascular tumour growth. Journal of Mathematical Biology, 45 (2). pp. 125-152.

Linnebacher, M

Drasdo, D and Fell, D and Ferrell, J and Gallahan, D and Gatenby, R. A. and Guenther, U and Herzel, H. and Junghanss, C and Kunz, M and Laplace, F and van Leeuwen, I. M. M. and Lenormand, P and Levi, F and Linnebacher, M and Lowengrub, J and Maini, P. K. and Marcus, F and Malik, A and Rateitschak, K and Sansom, O and Schafer, R and Schurrle, K and Sers, C and Schnell, S. and Harms, B and Shibata, D and Tyson, J and Vera, J and White, M and Zhivotovsky, B and Jaster, R and Wolkenhauer, O and Auffray, C and Baltrusch, S and Bluthgen, N and Byrne, H. M. and Cascante, M and Ciliberto, A and Dale, T (2010) Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research, 70 (1). pp. 12-13.

Lloyd, M

Perfahl, H and Byrne, H. M. and Chen, T and Estrella, V and Alarcon, T. and Lapin, A and Gatenby, R. A. and Gillies, R. J. and Lloyd, M C and Maini, P. K. and Reuss, M and Owen, M. R. (2013) 3D Multiscale modelling of angiogenesis and vascular tumour growth. In: Micro and Nano Flow Systems Flow Systems for Bioanalysis. Bioanalysis, 2 . Springer, New York, pp. 29-48.

Perfahl, H and Byrne, H. M. and Chen, T and Estrella, V and Alarcon, T. and Lapin, A and Gatenby, R. A. and Gilles, R and Lloyd, M C and Maini, P. K. and Reuss, M and Owen, M. R. (2011) Multiscale modelling of vascular tumour growth in 3D: the roles of domain size & boundary condition. PLOs One, 6 (4). 17 pages.

Loessner, D

Loessner, D. and Flegg, J. A. and Byrne, H. M. and Hall, C. L. and Moroney, T. J. and Clements, J. A. and McElwain, D. L. S. and Hutmacher, D. W. (2011) Growth of confined cancer spheroids: a combined experimental and mathematical modelling approach. Integrative Biology . (Submitted)

Loessner, D. and Flegg, J. A. and Byrne, H. M. and Hall, C. L. and Moroney, T. J. and Clements, J. A. and Hutmacher, D. W. and McElwain, D. L. S. (2010) Modeling the growth of multicellular cancer spheroids in a
bioengineered 3D microenvironment and their treatment with an
anti-cancer drug.
PLoS Computational Biology . (Submitted)

Lovrics, A

Lovrics, A. and Yu, G. and Juhász, B. and Bock, I. and Byrne, H. M. and Dinnyés, A. and Kovács, K. A. (2012) Boolean modelling reveals new regulatory connections between transcription factors orchestrating the development of the ventral spinal cord. Journal of the Royal Society Interface . (Submitted)

Lowengrub, J

Drasdo, D and Fell, D and Ferrell, J and Gallahan, D and Gatenby, R. A. and Guenther, U and Herzel, H. and Junghanss, C and Kunz, M and Laplace, F and van Leeuwen, I. M. M. and Lenormand, P and Levi, F and Linnebacher, M and Lowengrub, J and Maini, P. K. and Marcus, F and Malik, A and Rateitschak, K and Sansom, O and Schafer, R and Schurrle, K and Sers, C and Schnell, S. and Harms, B and Shibata, D and Tyson, J and Vera, J and White, M and Zhivotovsky, B and Jaster, R and Wolkenhauer, O and Auffray, C and Baltrusch, S and Bluthgen, N and Byrne, H. M. and Cascante, M and Ciliberto, A and Dale, T (2010) Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research, 70 (1). pp. 12-13.

Madzvamuse, A

Sekimura, T. and Madzvamuse, A. and Maini, P. K. (2007) Pigmentation pattern formation in butterfly wigns: Global patterns on fore- and hind-wing. In: Mathematical Modeling of Biological Systems. Modeling & Simulation in Science, Engineering and Technology, 1 (n/a). Birkhauser, Boston, pp. 141-148. ISBN n/a

Maini, P

Perfahl, H and Byrne, H. M. and Chen, T and Estrella, V and Alarcon, T. and Lapin, A and Gatenby, R. A. and Gillies, R. J. and Lloyd, M C and Maini, P. K. and Reuss, M and Owen, M. R. (2013) 3D Multiscale modelling of angiogenesis and vascular tumour growth. In: Micro and Nano Flow Systems Flow Systems for Bioanalysis. Bioanalysis, 2 . Springer, New York, pp. 29-48.

Connor, A. J. and Cooper, J. and Byrne, H. M. and Maini, P. K. and McKeever, S. (2012) Object-Oriented Paradigms for Modelling Vascular
Tumour Growth: a Case Study.
In: SIMUL2012. (Submitted)

Connor, A. J. and Cooper, J and Byrne, H. M. and Maini, P. K. and McKeever, S. (2012) Object-oriented paradigms for modelling vascular tumor growth: a case study. In: The Fourth International Conference on Advances in Systems Simulation. Simul 2012 . Iaria, Lisbon, pp. 74-83.

Mirams, G R and Fletcher, A G and Maini, P. K. and Byrne, H. M. (2012) A theoretical investigation of the effect of proliferation & adhesion on monoclonal conversion in the colonic crypt. Journal of Theoretical Biology, 312 (2). pp. 143-156.

Mirams, G R and Fletcher, A G and Maini, P. K. and Byrne, H. M. (2012) A theoretical investigation of the effect of proliferation and
adhesion on monoclonal conversion in the colonic crypt.
Journal of Theoretical Biology . (Submitted)

Perfahl, H and Byrne, H. M. and Chen, T and Estrella, V and Alarcon, T. and Lapin, A and Gatenby, R. A. and Gilles, R and Lloyd, M C and Maini, P. K. and Reuss, M and Owen, M. R. (2011) Multiscale modelling of vascular tumour growth in 3D: the roles of domain size & boundary condition. PLOs One, 6 (4). 17 pages.

Osborne, J and Walter, A and Kershaw, S. K. and Mirams, G R and Fletcher, A G and Pathmanathan, P. and Gavaghan, D. J. and Jensen, O E and Maini, P. K. and Byrne, H. M. (2010) A hybrid approach to multi-scale modelling of cancer. Philosophical Transactions of the Royal Society A, 368 (1930). pp. 5013-5028. ISSN 0962-8428

Murray, P J and Kang, J W and Mirams, G R and Shin, S Y and Byrne, H. M. and Maini, P. K. and Cho, K H (2010) Modelling spatially regulated B-catenin dynamics & invasion in intestinal crypts. Biophysical Journal , 99 (3). pp. 716-725.

Stamper, I. J. and Owen, M. R. and Maini, P. K. and Byrne, H. M. (2010) Oscillatory dynamics in a model of vascular tumour growth -- implications for chemotherapy. Biology Direct, 5 (27). pp. 1-17.

Drasdo, D and Fell, D and Ferrell, J and Gallahan, D and Gatenby, R. A. and Guenther, U and Herzel, H. and Junghanss, C and Kunz, M and Laplace, F and van Leeuwen, I. M. M. and Lenormand, P and Levi, F and Linnebacher, M and Lowengrub, J and Maini, P. K. and Marcus, F and Malik, A and Rateitschak, K and Sansom, O and Schafer, R and Schurrle, K and Sers, C and Schnell, S. and Harms, B and Shibata, D and Tyson, J and Vera, J and White, M and Zhivotovsky, B and Jaster, R and Wolkenhauer, O and Auffray, C and Baltrusch, S and Bluthgen, N and Byrne, H. M. and Cascante, M and Ciliberto, A and Dale, T (2010) Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research, 70 (1). pp. 12-13.

Owen, M. R. and Alarcon, T. and Maini, P. K. and Byrne, H. M. (2009) Angiogenesis and vascular remodelling in normal and cancerous tissues. Journal of Mathematical Biology, 58 (4-5). pp. 689-721.

Pitt-Francis, J and Pathmanathan, P. and Bernabeu, M O and Bordas, R and Cooper, J and Fletcher, A G and Mirams, G R and Murray, P J and Osbourne, J and Walter, A and Chapman, S. J. and Garny, A. and van Leeuwen, I. M. M. and Maini, P. K. and Rodriguez, B and Waters, S. L. and Whiteley, J. P. and Byrne, H. M. and Gavaghan, D. J. (2009) Chaste: a test-driven approach to software development for biological modelling. Computer Physics Communications, 180 (12). pp. 2452-2471.

Pitt-Francis, J and Pathmanathan, P. and Bernabeu, M O and Bordas, R and Cooper, J and Fletcher, A G and Mirams, G R and Murray, P J and Osbourne, J and Walter, A and Chapman, S. J. and Garny, A. and van Leeuwen, I. M. M. and Maini, P. K. and Rodriguez, B and Whiteley, J. P. and Byrne, H. M. and Gavaghan, D. J. (2009) Chaste: a test-driven approach to software development for physiological modelling. Not specified . (Submitted)

van Leeuwen, I. M. M. and Mirams, G R and Walter, A and Fletcher, A G and Murray, P J and Osbourne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation, 42 (5). pp. 617-636.

Leeuwen, I M M and Mirams, G R and Walter, A and Fletcher, A and Murray, P J and Osborne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation .

van Leeuwen, I. M. M. and Byrne, H. M. and Johnston, M. D. and Edwards, C. M. and Chapman, S. J. and Bodmer, W. F. and Maini, P. K. (2008) Modelling multiscale aspects of colorectal cancer. AIP Conference Proceedings, 971 (1). pp. 3-7.

Byrne, H. M. and van Leeuwen, I. M. M. and Owen, M. R. and Alarcon, T. and Maini, P. K. (2008) Multiscale modelling of solid tumour growth. In: Selected Topics in Cancer Modeling. Genesis, Evolution, Immune Competition, & Therapy, n/a (n/a). Birkhauser, Boston, USA, pp. 449-473. ISBN 978-0-8176-4712-4

Panovska, J. and Byrne, H. M. and Maini, P. K. (2008) A theoretical study of the response of vascular tumours to different types of chemotherapy. Mathematical and Computer Modelling, 47 (5-6). pp. 560-579.

Panovska, J. and Byrne, H. M. and Maini, P. K. (2007) Mathematical modelling of vascular tumour growth and implications for therapy. In: Mathematical Modeling of Biological Systems. Modeling and Simulation in Science, Engineering and Technology, I (n/a). Birkhauser, Boston, pp. 205-216. ISBN n/a

Stamper, I. J. and Byrne, H. M. and Maini, P. K. (2007) Modelling the role of angiogenesis and vasculogenesis in solid tumuour growth. Bulletin of Mathematical Biology, 69 (8). pp. 2737-2772. ISSN n/a

Sekimura, T. and Madzvamuse, A. and Maini, P. K. (2007) Pigmentation pattern formation in butterfly wigns: Global patterns on fore- and hind-wing. In: Mathematical Modeling of Biological Systems. Modeling & Simulation in Science, Engineering and Technology, 1 (n/a). Birkhauser, Boston, pp. 141-148. ISBN n/a

Maini, P. K. and Alarcon, T. and Byrne, H. M. and Owen, M. R. and Murphy, J. (2007) Structural adaptation in normal and cancerous vasculature. In: In: MathEverywhere: Deterministic and Stochastic Modelling in Biomedicine, Economics and Industry. Springer, Berlin, Germany, pp. 165-178. ISBN 3-540-44445-9

Maini, P. K. and Alarcon, T. and Byrne, H. M. and Owen, M. R. and Murphy, J. (2007) Structural adaptation in normal and cancerous vasculature. In: In: MathEverywhere: Deterministic and Stochastic Modelling in Biomedicine, Economics and Industry. Springer, Berlin, Germany, pp. 165-178. ISBN 3-540-44445-9

Maini, P. K. and Alarcon, T. and Byrne, H. M. and Owen, M. R. and Murphy, J. (2007) Structural adaptation in normal and cancerous vasculature. In: In: MathEverywhere: Deterministic and Stochastic Modelling in Biomedicine, Economics and Industry. Springer, Berlin, Germany, pp. 165-178. ISBN 3-540-44445-9

Betteridge, R. and Owen, M. R. and Byrne, H. M. and Alarcon, T. and Maini, P. K. (2006) The impact of cell crowding and active cell movement on vascular tumour growth. Networks and Heterogeneous Media, 1 (4). pp. 515-535.

Byrne, H. M. and Owen, M. R. and Alarcon, T. and Murphy, J. and Maini, P. K. (2006) Modelling the response of vascular tumours to chemotherapy: A multiscale approach. Mathematical Models and Methods in Applied Sciences, 16 (7S). pp. 1219-1241.

Byrne, H. M. and Alarcon, T. and Owen, M. R. and Webb, S. D. and Maini, P. K. (2006) Modelling aspects of cancer dynamics: a review. Philosophical Transactions of the Royal Society A, 364 (1843). pp. 1563-1578.

Alarcon, T. and Owen, M. R. and Byrne, H. M. and Maini, P. K. (2006) Multiscale modelling of tumour growth and therapy: the influence of vessel normalisation on chemotherapy. Computational & Mathematical Methods in Medicine, 7 (2-3). pp. 85-119.

Byrne, H. M. and Owen, M. R. and Alarcon, T. and Maini, P. K. (2006) Cancer disease: integrative modelling approaches. 3rd IEEE International Symposium on Biomedical Imaging (1). pp. 806-809.

Alarcon, T. and Byrne, H. M. and Maini, P. K. and Panovska, J. (2006) Mathematical modelling of angiogenesis and vascular adaptation. In, Multidisciplinary Approaches to the Theory of Medicine, R. Paton and L.A. McNamara (eds) Studies in Multidisciplinarity,, 3 . pp. 369-387.

Maini, P. K. and Alarcon, T. and Byrne, H. M. (2006) Modelling aspects of vascular cancer development. Proceedings of the International Symposium on Mathematical and Computational Biology, R.P. Mondaini and R. Dilao (eds), World Scientific . 1 -12.

Byrne, H. M. and Alarcon, T. and Maini, P. K. (2005) Cancer modelling: Getting to the heart of the problem. Journal of Physiology, 561P, SA9 . 4P.

Alarcon, T. and Byrne, H. M. and Maini, P. K. (2005) A design principle for vascular beds: the effects of complex blood rheology. Microvascular Research, 69 (3). pp. 156-172.

Alarcon, T. and Byrne, H. M. and Maini, P. K. (2005) A multiple scale model for tumor growth. Multiscale Model Simulation, 3 (2). pp. 440-475.

Alarcon, T. and Byrne, H. M. and Maini, P. K. (2004) A mathematical model of the effects of hypoxia on the cell-cycle of normal and cancer cells. Journal of theoretical Biology, 229 (3). pp. 395-411.

Alarcon, T. and Byrne, H. M. and Maini, P. K. (2004) Towards whole-organ modelling of tumour growth. Progress in Biophysics and Molecular Biology, 85 (2-3). pp. 451-472.

Alarcon, T. and Byrne, H. M. and Maini, P. K. (2003) A cellular automaton model for tumour growth in inhomogeneous environment. Journal of Theoretical Biology, 225 (2). pp. 257-274.

Malik, A

Drasdo, D and Fell, D and Ferrell, J and Gallahan, D and Gatenby, R. A. and Guenther, U and Herzel, H. and Junghanss, C and Kunz, M and Laplace, F and van Leeuwen, I. M. M. and Lenormand, P and Levi, F and Linnebacher, M and Lowengrub, J and Maini, P. K. and Marcus, F and Malik, A and Rateitschak, K and Sansom, O and Schafer, R and Schurrle, K and Sers, C and Schnell, S. and Harms, B and Shibata, D and Tyson, J and Vera, J and White, M and Zhivotovsky, B and Jaster, R and Wolkenhauer, O and Auffray, C and Baltrusch, S and Bluthgen, N and Byrne, H. M. and Cascante, M and Ciliberto, A and Dale, T (2010) Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research, 70 (1). pp. 12-13.

Mann, G

Sotiris, A. and Prokopiou, S. A. and Byrne, H. M. and Jeffrey, M. R. and Robinson, R. S. and Mann, G. E. and Owen, M. R. (2013) Mathematical analysis of a model for the growth of the bovine corpus luteum. Journal of Mathematical Biology . (Submitted)

Marchant, B

Marchant, Ben P. and Norbury, John and Byrne, H. M. (2006) Biphasic behaviour in malignant invasion. Mathematical Medicine and Biology, 23 (3). pp. 173-196.

Marcus, F

Drasdo, D and Fell, D and Ferrell, J and Gallahan, D and Gatenby, R. A. and Guenther, U and Herzel, H. and Junghanss, C and Kunz, M and Laplace, F and van Leeuwen, I. M. M. and Lenormand, P and Levi, F and Linnebacher, M and Lowengrub, J and Maini, P. K. and Marcus, F and Malik, A and Rateitschak, K and Sansom, O and Schafer, R and Schurrle, K and Sers, C and Schnell, S. and Harms, B and Shibata, D and Tyson, J and Vera, J and White, M and Zhivotovsky, B and Jaster, R and Wolkenhauer, O and Auffray, C and Baltrusch, S and Bluthgen, N and Byrne, H. M. and Cascante, M and Ciliberto, A and Dale, T (2010) Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research, 70 (1). pp. 12-13.

McElwain, D

Loessner, D. and Flegg, J. A. and Byrne, H. M. and Hall, C. L. and Moroney, T. J. and Clements, J. A. and McElwain, D. L. S. and Hutmacher, D. W. (2011) Growth of confined cancer spheroids: a combined experimental and mathematical modelling approach. Integrative Biology . (Submitted)

Flegg, J. A. and Byrne, H. M. and Flegg, M. B. and McElwain, D. L. S. (2011) Wound healing angiogenesis the clinical implications of a simple mathematical model. Journal of Theoretical Biology . (Submitted)

Loessner, D. and Flegg, J. A. and Byrne, H. M. and Hall, C. L. and Moroney, T. J. and Clements, J. A. and Hutmacher, D. W. and McElwain, D. L. S. (2010) Modeling the growth of multicellular cancer spheroids in a
bioengineered 3D microenvironment and their treatment with an
anti-cancer drug.
PLoS Computational Biology . (Submitted)

McKeever, S

Connor, A. J. and Cooper, J. and Byrne, H. M. and Maini, P. K. and McKeever, S. (2012) Object-Oriented Paradigms for Modelling Vascular
Tumour Growth: a Case Study.
In: SIMUL2012. (Submitted)

Connor, A. J. and Cooper, J and Byrne, H. M. and Maini, P. K. and McKeever, S. (2012) Object-oriented paradigms for modelling vascular tumor growth: a case study. In: The Fourth International Conference on Advances in Systems Simulation. Simul 2012 . Iaria, Lisbon, pp. 74-83.

Meyer-Hermann, M

Jain, H. V. and Richardson, A. and Meyer-Hermann, M. E. and Byrne, H. M. (2012) Exploiting the synergy between carboplatin and ABT-737 in the treatment of ovarian carcinomas. Cancer Research . (Submitted)

Mirams, G

Mirams, G R and Fletcher, A G and Maini, P. K. and Byrne, H. M. (2012) A theoretical investigation of the effect of proliferation & adhesion on monoclonal conversion in the colonic crypt. Journal of Theoretical Biology, 312 (2). pp. 143-156.

Mirams, G R and Fletcher, A G and Maini, P. K. and Byrne, H. M. (2012) A theoretical investigation of the effect of proliferation and
adhesion on monoclonal conversion in the colonic crypt.
Journal of Theoretical Biology . (Submitted)

Osborne, J and Walter, A and Kershaw, S. K. and Mirams, G R and Fletcher, A G and Pathmanathan, P. and Gavaghan, D. J. and Jensen, O E and Maini, P. K. and Byrne, H. M. (2010) A hybrid approach to multi-scale modelling of cancer. Philosophical Transactions of the Royal Society A, 368 (1930). pp. 5013-5028. ISSN 0962-8428

Murray, P J and Kang, J W and Mirams, G R and Shin, S Y and Byrne, H. M. and Maini, P. K. and Cho, K H (2010) Modelling spatially regulated B-catenin dynamics & invasion in intestinal crypts. Biophysical Journal , 99 (3). pp. 716-725.

Pitt-Francis, J and Pathmanathan, P. and Bernabeu, M O and Bordas, R and Cooper, J and Fletcher, A G and Mirams, G R and Murray, P J and Osbourne, J and Walter, A and Chapman, S. J. and Garny, A. and van Leeuwen, I. M. M. and Maini, P. K. and Rodriguez, B and Waters, S. L. and Whiteley, J. P. and Byrne, H. M. and Gavaghan, D. J. (2009) Chaste: a test-driven approach to software development for biological modelling. Computer Physics Communications, 180 (12). pp. 2452-2471.

Pitt-Francis, J and Pathmanathan, P. and Bernabeu, M O and Bordas, R and Cooper, J and Fletcher, A G and Mirams, G R and Murray, P J and Osbourne, J and Walter, A and Chapman, S. J. and Garny, A. and van Leeuwen, I. M. M. and Maini, P. K. and Rodriguez, B and Whiteley, J. P. and Byrne, H. M. and Gavaghan, D. J. (2009) Chaste: a test-driven approach to software development for physiological modelling. Not specified . (Submitted)

van Leeuwen, I. M. M. and Mirams, G R and Walter, A and Fletcher, A G and Murray, P J and Osbourne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation, 42 (5). pp. 617-636.

Leeuwen, I M M and Mirams, G R and Walter, A and Fletcher, A and Murray, P J and Osborne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation .

Moldovan, N

Jain, H. V. and Moldovan, N. I. and Byrne, H. M. (2012) Modeling Stem/Progenitor Cell-Induced Neovascularization and
Oxygenation around Solid Implants.
Tissue Engineering Part C . (Submitted)

Momtahan, L

van Leeuwen, I. M. M. and Mirams, G R and Walter, A and Fletcher, A G and Murray, P J and Osbourne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation, 42 (5). pp. 617-636.

Leeuwen, I M M and Mirams, G R and Walter, A and Fletcher, A and Murray, P J and Osborne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation .

Moroney, T

Loessner, D. and Flegg, J. A. and Byrne, H. M. and Hall, C. L. and Moroney, T. J. and Clements, J. A. and McElwain, D. L. S. and Hutmacher, D. W. (2011) Growth of confined cancer spheroids: a combined experimental and mathematical modelling approach. Integrative Biology . (Submitted)

Loessner, D. and Flegg, J. A. and Byrne, H. M. and Hall, C. L. and Moroney, T. J. and Clements, J. A. and Hutmacher, D. W. and McElwain, D. L. S. (2010) Modeling the growth of multicellular cancer spheroids in a
bioengineered 3D microenvironment and their treatment with an
anti-cancer drug.
PLoS Computational Biology . (Submitted)

Muraro, D

Muraro, D. and Voß, U. and Wilson, M. and Bennett, M. and Byrne, H. M. and de Smet, I. and Hodgman, C. and King, J. R. (2012) Inference of the genetic network regulating lateral root initiation in Arabidopsis thaliana. Transactions on Computational Biology and Bioinformatics . (Submitted)

Muraro, D. and Byrne, H. M. and King, J. R. and Bennett, M. J. (2012) Mathematical modelling plant signalling networks. Mathematical Modelling of Natural Phenomena . (Submitted)

Murphy, J

Maini, P. K. and Alarcon, T. and Byrne, H. M. and Owen, M. R. and Murphy, J. (2007) Structural adaptation in normal and cancerous vasculature. In: In: MathEverywhere: Deterministic and Stochastic Modelling in Biomedicine, Economics and Industry. Springer, Berlin, Germany, pp. 165-178. ISBN 3-540-44445-9

Maini, P. K. and Alarcon, T. and Byrne, H. M. and Owen, M. R. and Murphy, J. (2007) Structural adaptation in normal and cancerous vasculature. In: In: MathEverywhere: Deterministic and Stochastic Modelling in Biomedicine, Economics and Industry. Springer, Berlin, Germany, pp. 165-178. ISBN 3-540-44445-9

Maini, P. K. and Alarcon, T. and Byrne, H. M. and Owen, M. R. and Murphy, J. (2007) Structural adaptation in normal and cancerous vasculature. In: In: MathEverywhere: Deterministic and Stochastic Modelling in Biomedicine, Economics and Industry. Springer, Berlin, Germany, pp. 165-178. ISBN 3-540-44445-9

Byrne, H. M. and Owen, M. R. and Alarcon, T. and Murphy, J. and Maini, P. K. (2006) Modelling the response of vascular tumours to chemotherapy: A multiscale approach. Mathematical Models and Methods in Applied Sciences, 16 (7S). pp. 1219-1241.

Murray, P

Murray, P J and Kang, J W and Mirams, G R and Shin, S Y and Byrne, H. M. and Maini, P. K. and Cho, K H (2010) Modelling spatially regulated B-catenin dynamics & invasion in intestinal crypts. Biophysical Journal , 99 (3). pp. 716-725.

Pitt-Francis, J and Pathmanathan, P. and Bernabeu, M O and Bordas, R and Cooper, J and Fletcher, A G and Mirams, G R and Murray, P J and Osbourne, J and Walter, A and Chapman, S. J. and Garny, A. and van Leeuwen, I. M. M. and Maini, P. K. and Rodriguez, B and Waters, S. L. and Whiteley, J. P. and Byrne, H. M. and Gavaghan, D. J. (2009) Chaste: a test-driven approach to software development for biological modelling. Computer Physics Communications, 180 (12). pp. 2452-2471.

Pitt-Francis, J and Pathmanathan, P. and Bernabeu, M O and Bordas, R and Cooper, J and Fletcher, A G and Mirams, G R and Murray, P J and Osbourne, J and Walter, A and Chapman, S. J. and Garny, A. and van Leeuwen, I. M. M. and Maini, P. K. and Rodriguez, B and Whiteley, J. P. and Byrne, H. M. and Gavaghan, D. J. (2009) Chaste: a test-driven approach to software development for physiological modelling. Not specified . (Submitted)

van Leeuwen, I. M. M. and Mirams, G R and Walter, A and Fletcher, A G and Murray, P J and Osbourne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation, 42 (5). pp. 617-636.

Leeuwen, I M M and Mirams, G R and Walter, A and Fletcher, A and Murray, P J and Osborne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation .

Norbury, J

Marchant, Ben P. and Norbury, John and Byrne, H. M. (2006) Biphasic behaviour in malignant invasion. Mathematical Medicine and Biology, 23 (3). pp. 173-196.

O'Dea, R

O'Dea, R. D. and Osborne, J. M. and El Haj, A. J. and Byrne, H. M. and Waters, S. L. (2012) The interplay between tissue growth and scaffold degradation in engineered tissue constructs. Journal of Mathematical Biology . (Submitted)

Osborne, J. M. and O'Dea, R. D. and Whiteley, J. P. and Byrne, H. M. and Waters, S. L. (2010) The influence of bioreactor geometry and the mechanical
environment on engineered tissues.
ASME Journal of Biomechanical Engineering, 132 No. 5 (pp 51006).

O'Dea, R. D. and Waters, S. L. and Byrne, H. M. (2008) A two-fluid model for tissue growth within
a dynamic flow environment.
Euro. Jnl of Applied Mathematics .

Osborne, J

Kershaw, S. K. and Byrne, H. M. and Gavaghan, D. J. and Osborne, J. M. (2012) Colorectal Cancer Through Simulation and Experiment. IET Systems Biology . (Submitted)

O'Dea, R. D. and Osborne, J. M. and El Haj, A. J. and Byrne, H. M. and Waters, S. L. (2012) The interplay between tissue growth and scaffold degradation in engineered tissue constructs. Journal of Mathematical Biology . (Submitted)

Figueredo, G. and Joshi, T. and Osborne, J. and Byrne, H. M. and Owen, M. (2012) On-lattice agent-based simulation of populations of cells within the open-source chaste framework. Interface Focus . (Submitted)

Davit, Y. and Byrne, H. M. and Osborne, J. M. and Pitt-Francis, J. M. and Gavaghan, D. J. and Quintard, M. (2012) Solute transport within porous biofilms: diffusion or dispersion? Physical Review E . (Submitted)

Davit, Y. and Osborne, J. M. and Byrne, H. M. and Gavaghan, D. J. and Pitt-Francis, J. M. (2012) Validity of the Cauchy-Born rule applied to discrete cellular-scale models of biological tissues. Physical Review E . (Submitted)

Osborne, J and Walter, A and Kershaw, S. K. and Mirams, G R and Fletcher, A G and Pathmanathan, P. and Gavaghan, D. J. and Jensen, O E and Maini, P. K. and Byrne, H. M. (2010) A hybrid approach to multi-scale modelling of cancer. Philosophical Transactions of the Royal Society A, 368 (1930). pp. 5013-5028. ISSN 0962-8428

Osborne, J. M. and O'Dea, R. D. and Whiteley, J. P. and Byrne, H. M. and Waters, S. L. (2010) The influence of bioreactor geometry and the mechanical
environment on engineered tissues.
ASME Journal of Biomechanical Engineering, 132 No. 5 (pp 51006).

Leeuwen, I M M and Mirams, G R and Walter, A and Fletcher, A and Murray, P J and Osborne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation .

Osbourne, J

Pitt-Francis, J and Pathmanathan, P. and Bernabeu, M O and Bordas, R and Cooper, J and Fletcher, A G and Mirams, G R and Murray, P J and Osbourne, J and Walter, A and Chapman, S. J. and Garny, A. and van Leeuwen, I. M. M. and Maini, P. K. and Rodriguez, B and Waters, S. L. and Whiteley, J. P. and Byrne, H. M. and Gavaghan, D. J. (2009) Chaste: a test-driven approach to software development for biological modelling. Computer Physics Communications, 180 (12). pp. 2452-2471.

Pitt-Francis, J and Pathmanathan, P. and Bernabeu, M O and Bordas, R and Cooper, J and Fletcher, A G and Mirams, G R and Murray, P J and Osbourne, J and Walter, A and Chapman, S. J. and Garny, A. and van Leeuwen, I. M. M. and Maini, P. K. and Rodriguez, B and Whiteley, J. P. and Byrne, H. M. and Gavaghan, D. J. (2009) Chaste: a test-driven approach to software development for physiological modelling. Not specified . (Submitted)

van Leeuwen, I. M. M. and Mirams, G R and Walter, A and Fletcher, A G and Murray, P J and Osbourne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation, 42 (5). pp. 617-636.

Owen, M

Perfahl, H and Byrne, H. M. and Chen, T and Estrella, V and Alarcon, T. and Lapin, A and Gatenby, R. A. and Gillies, R. J. and Lloyd, M C and Maini, P. K. and Reuss, M and Owen, M. R. (2013) 3D Multiscale modelling of angiogenesis and vascular tumour growth. In: Micro and Nano Flow Systems Flow Systems for Bioanalysis. Bioanalysis, 2 . Springer, New York, pp. 29-48.

Sotiris, A. and Prokopiou, S. A. and Byrne, H. M. and Jeffrey, M. R. and Robinson, R. S. and Mann, G. E. and Owen, M. R. (2013) Mathematical analysis of a model for the growth of the bovine corpus luteum. Journal of Mathematical Biology . (Submitted)

Figueredo, G. and Joshi, T. and Osborne, J. and Byrne, H. M. and Owen, M. (2012) On-lattice agent-based simulation of populations of cells within the open-source chaste framework. Interface Focus . (Submitted)

Perfahl, H and Byrne, H. M. and Chen, T and Estrella, V and Alarcon, T. and Lapin, A and Gatenby, R. A. and Gilles, R and Lloyd, M C and Maini, P. K. and Reuss, M and Owen, M. R. (2011) Multiscale modelling of vascular tumour growth in 3D: the roles of domain size & boundary condition. PLOs One, 6 (4). 17 pages.

Stamper, I. J. and Owen, M. R. and Maini, P. K. and Byrne, H. M. (2010) Oscillatory dynamics in a model of vascular tumour growth -- implications for chemotherapy. Biology Direct, 5 (27). pp. 1-17.

Owen, M. R. and Alarcon, T. and Maini, P. K. and Byrne, H. M. (2009) Angiogenesis and vascular remodelling in normal and cancerous tissues. Journal of Mathematical Biology, 58 (4-5). pp. 689-721.

Byrne, H. M. and van Leeuwen, I. M. M. and Owen, M. R. and Alarcon, T. and Maini, P. K. (2008) Multiscale modelling of solid tumour growth. In: Selected Topics in Cancer Modeling. Genesis, Evolution, Immune Competition, & Therapy, n/a (n/a). Birkhauser, Boston, USA, pp. 449-473. ISBN 978-0-8176-4712-4

Maini, P. K. and Alarcon, T. and Byrne, H. M. and Owen, M. R. and Murphy, J. (2007) Structural adaptation in normal and cancerous vasculature. In: In: MathEverywhere: Deterministic and Stochastic Modelling in Biomedicine, Economics and Industry. Springer, Berlin, Germany, pp. 165-178. ISBN 3-540-44445-9

Maini, P. K. and Alarcon, T. and Byrne, H. M. and Owen, M. R. and Murphy, J. (2007) Structural adaptation in normal and cancerous vasculature. In: In: MathEverywhere: Deterministic and Stochastic Modelling in Biomedicine, Economics and Industry. Springer, Berlin, Germany, pp. 165-178. ISBN 3-540-44445-9

Maini, P. K. and Alarcon, T. and Byrne, H. M. and Owen, M. R. and Murphy, J. (2007) Structural adaptation in normal and cancerous vasculature. In: In: MathEverywhere: Deterministic and Stochastic Modelling in Biomedicine, Economics and Industry. Springer, Berlin, Germany, pp. 165-178. ISBN 3-540-44445-9

Betteridge, R. and Owen, M. R. and Byrne, H. M. and Alarcon, T. and Maini, P. K. (2006) The impact of cell crowding and active cell movement on vascular tumour growth. Networks and Heterogeneous Media, 1 (4). pp. 515-535.

Byrne, H. M. and Owen, M. R. and Alarcon, T. and Murphy, J. and Maini, P. K. (2006) Modelling the response of vascular tumours to chemotherapy: A multiscale approach. Mathematical Models and Methods in Applied Sciences, 16 (7S). pp. 1219-1241.

Byrne, H. M. and Alarcon, T. and Owen, M. R. and Webb, S. D. and Maini, P. K. (2006) Modelling aspects of cancer dynamics: a review. Philosophical Transactions of the Royal Society A, 364 (1843). pp. 1563-1578.

Alarcon, T. and Owen, M. R. and Byrne, H. M. and Maini, P. K. (2006) Multiscale modelling of tumour growth and therapy: the influence of vessel normalisation on chemotherapy. Computational & Mathematical Methods in Medicine, 7 (2-3). pp. 85-119.

Byrne, H. M. and Owen, M. R. and Alarcon, T. and Maini, P. K. (2006) Cancer disease: integrative modelling approaches. 3rd IEEE International Symposium on Biomedical Imaging (1). pp. 806-809.

Panovska, J

Panovska, J. and Byrne, H. M. and Maini, P. K. (2008) A theoretical study of the response of vascular tumours to different types of chemotherapy. Mathematical and Computer Modelling, 47 (5-6). pp. 560-579.

Panovska, J. and Byrne, H. M. and Maini, P. K. (2007) Mathematical modelling of vascular tumour growth and implications for therapy. In: Mathematical Modeling of Biological Systems. Modeling and Simulation in Science, Engineering and Technology, I (n/a). Birkhauser, Boston, pp. 205-216. ISBN n/a

Alarcon, T. and Byrne, H. M. and Maini, P. K. and Panovska, J. (2006) Mathematical modelling of angiogenesis and vascular adaptation. In, Multidisciplinary Approaches to the Theory of Medicine, R. Paton and L.A. McNamara (eds) Studies in Multidisciplinarity,, 3 . pp. 369-387.

Pathmanathan, P

Osborne, J and Walter, A and Kershaw, S. K. and Mirams, G R and Fletcher, A G and Pathmanathan, P. and Gavaghan, D. J. and Jensen, O E and Maini, P. K. and Byrne, H. M. (2010) A hybrid approach to multi-scale modelling of cancer. Philosophical Transactions of the Royal Society A, 368 (1930). pp. 5013-5028. ISSN 0962-8428

Pitt-Francis, J and Pathmanathan, P. and Bernabeu, M O and Bordas, R and Cooper, J and Fletcher, A G and Mirams, G R and Murray, P J and Osbourne, J and Walter, A and Chapman, S. J. and Garny, A. and van Leeuwen, I. M. M. and Maini, P. K. and Rodriguez, B and Waters, S. L. and Whiteley, J. P. and Byrne, H. M. and Gavaghan, D. J. (2009) Chaste: a test-driven approach to software development for biological modelling. Computer Physics Communications, 180 (12). pp. 2452-2471.

Pitt-Francis, J and Pathmanathan, P. and Bernabeu, M O and Bordas, R and Cooper, J and Fletcher, A G and Mirams, G R and Murray, P J and Osbourne, J and Walter, A and Chapman, S. J. and Garny, A. and van Leeuwen, I. M. M. and Maini, P. K. and Rodriguez, B and Whiteley, J. P. and Byrne, H. M. and Gavaghan, D. J. (2009) Chaste: a test-driven approach to software development for physiological modelling. Not specified . (Submitted)

van Leeuwen, I. M. M. and Mirams, G R and Walter, A and Fletcher, A G and Murray, P J and Osbourne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation, 42 (5). pp. 617-636.

Leeuwen, I M M and Mirams, G R and Walter, A and Fletcher, A and Murray, P J and Osborne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation .

Perfahl, H

Perfahl, H and Byrne, H. M. and Chen, T and Estrella, V and Alarcon, T. and Lapin, A and Gatenby, R. A. and Gillies, R. J. and Lloyd, M C and Maini, P. K. and Reuss, M and Owen, M. R. (2013) 3D Multiscale modelling of angiogenesis and vascular tumour growth. In: Micro and Nano Flow Systems Flow Systems for Bioanalysis. Bioanalysis, 2 . Springer, New York, pp. 29-48.

Perfahl, H and Byrne, H. M. and Chen, T and Estrella, V and Alarcon, T. and Lapin, A and Gatenby, R. A. and Gilles, R and Lloyd, M C and Maini, P. K. and Reuss, M and Owen, M. R. (2011) Multiscale modelling of vascular tumour growth in 3D: the roles of domain size & boundary condition. PLOs One, 6 (4). 17 pages.

Pitt-Francis, J

Davit, Y. and Byrne, H. M. and Osborne, J. M. and Pitt-Francis, J. M. and Gavaghan, D. J. and Quintard, M. (2012) Solute transport within porous biofilms: diffusion or dispersion? Physical Review E . (Submitted)

Davit, Y. and Osborne, J. M. and Byrne, H. M. and Gavaghan, D. J. and Pitt-Francis, J. M. (2012) Validity of the Cauchy-Born rule applied to discrete cellular-scale models of biological tissues. Physical Review E . (Submitted)

Pitt-Francis, J and Pathmanathan, P. and Bernabeu, M O and Bordas, R and Cooper, J and Fletcher, A G and Mirams, G R and Murray, P J and Osbourne, J and Walter, A and Chapman, S. J. and Garny, A. and van Leeuwen, I. M. M. and Maini, P. K. and Rodriguez, B and Waters, S. L. and Whiteley, J. P. and Byrne, H. M. and Gavaghan, D. J. (2009) Chaste: a test-driven approach to software development for biological modelling. Computer Physics Communications, 180 (12). pp. 2452-2471.

Pitt-Francis, J and Pathmanathan, P. and Bernabeu, M O and Bordas, R and Cooper, J and Fletcher, A G and Mirams, G R and Murray, P J and Osbourne, J and Walter, A and Chapman, S. J. and Garny, A. and van Leeuwen, I. M. M. and Maini, P. K. and Rodriguez, B and Whiteley, J. P. and Byrne, H. M. and Gavaghan, D. J. (2009) Chaste: a test-driven approach to software development for physiological modelling. Not specified . (Submitted)

van Leeuwen, I. M. M. and Mirams, G R and Walter, A and Fletcher, A G and Murray, P J and Osbourne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation, 42 (5). pp. 617-636.

Leeuwen, I M M and Mirams, G R and Walter, A and Fletcher, A and Murray, P J and Osborne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation .

Prokopiou, S

Sotiris, A. and Prokopiou, S. A. and Byrne, H. M. and Jeffrey, M. R. and Robinson, R. S. and Mann, G. E. and Owen, M. R. (2013) Mathematical analysis of a model for the growth of the bovine corpus luteum. Journal of Mathematical Biology . (Submitted)

Quintard, M

Davit, Y. and Byrne, H. M. and Osborne, J. M. and Pitt-Francis, J. M. and Gavaghan, D. J. and Quintard, M. (2012) Solute transport within porous biofilms: diffusion or dispersion? Physical Review E . (Submitted)

Rateitschak, K

Drasdo, D and Fell, D and Ferrell, J and Gallahan, D and Gatenby, R. A. and Guenther, U and Herzel, H. and Junghanss, C and Kunz, M and Laplace, F and van Leeuwen, I. M. M. and Lenormand, P and Levi, F and Linnebacher, M and Lowengrub, J and Maini, P. K. and Marcus, F and Malik, A and Rateitschak, K and Sansom, O and Schafer, R and Schurrle, K and Sers, C and Schnell, S. and Harms, B and Shibata, D and Tyson, J and Vera, J and White, M and Zhivotovsky, B and Jaster, R and Wolkenhauer, O and Auffray, C and Baltrusch, S and Bluthgen, N and Byrne, H. M. and Cascante, M and Ciliberto, A and Dale, T (2010) Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research, 70 (1). pp. 12-13.

Reuss, M

Perfahl, H and Byrne, H. M. and Chen, T and Estrella, V and Alarcon, T. and Lapin, A and Gatenby, R. A. and Gillies, R. J. and Lloyd, M C and Maini, P. K. and Reuss, M and Owen, M. R. (2013) 3D Multiscale modelling of angiogenesis and vascular tumour growth. In: Micro and Nano Flow Systems Flow Systems for Bioanalysis. Bioanalysis, 2 . Springer, New York, pp. 29-48.

Perfahl, H and Byrne, H. M. and Chen, T and Estrella, V and Alarcon, T. and Lapin, A and Gatenby, R. A. and Gilles, R and Lloyd, M C and Maini, P. K. and Reuss, M and Owen, M. R. (2011) Multiscale modelling of vascular tumour growth in 3D: the roles of domain size & boundary condition. PLOs One, 6 (4). 17 pages.

Richardson, A

Jain, H. V. and Richardson, A. and Meyer-Hermann, M. E. and Byrne, H. M. (2012) Exploiting the synergy between carboplatin and ABT-737 in the treatment of ovarian carcinomas. Cancer Research . (Submitted)

Robinson, R

Sotiris, A. and Prokopiou, S. A. and Byrne, H. M. and Jeffrey, M. R. and Robinson, R. S. and Mann, G. E. and Owen, M. R. (2013) Mathematical analysis of a model for the growth of the bovine corpus luteum. Journal of Mathematical Biology . (Submitted)

Rodriguez, B

Pitt-Francis, J and Pathmanathan, P. and Bernabeu, M O and Bordas, R and Cooper, J and Fletcher, A G and Mirams, G R and Murray, P J and Osbourne, J and Walter, A and Chapman, S. J. and Garny, A. and van Leeuwen, I. M. M. and Maini, P. K. and Rodriguez, B and Waters, S. L. and Whiteley, J. P. and Byrne, H. M. and Gavaghan, D. J. (2009) Chaste: a test-driven approach to software development for biological modelling. Computer Physics Communications, 180 (12). pp. 2452-2471.

Pitt-Francis, J and Pathmanathan, P. and Bernabeu, M O and Bordas, R and Cooper, J and Fletcher, A G and Mirams, G R and Murray, P J and Osbourne, J and Walter, A and Chapman, S. J. and Garny, A. and van Leeuwen, I. M. M. and Maini, P. K. and Rodriguez, B and Whiteley, J. P. and Byrne, H. M. and Gavaghan, D. J. (2009) Chaste: a test-driven approach to software development for physiological modelling. Not specified . (Submitted)

Sansom, O

Drasdo, D and Fell, D and Ferrell, J and Gallahan, D and Gatenby, R. A. and Guenther, U and Herzel, H. and Junghanss, C and Kunz, M and Laplace, F and van Leeuwen, I. M. M. and Lenormand, P and Levi, F and Linnebacher, M and Lowengrub, J and Maini, P. K. and Marcus, F and Malik, A and Rateitschak, K and Sansom, O and Schafer, R and Schurrle, K and Sers, C and Schnell, S. and Harms, B and Shibata, D and Tyson, J and Vera, J and White, M and Zhivotovsky, B and Jaster, R and Wolkenhauer, O and Auffray, C and Baltrusch, S and Bluthgen, N and Byrne, H. M. and Cascante, M and Ciliberto, A and Dale, T (2010) Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research, 70 (1). pp. 12-13.

Schafer, R

Drasdo, D and Fell, D and Ferrell, J and Gallahan, D and Gatenby, R. A. and Guenther, U and Herzel, H. and Junghanss, C and Kunz, M and Laplace, F and van Leeuwen, I. M. M. and Lenormand, P and Levi, F and Linnebacher, M and Lowengrub, J and Maini, P. K. and Marcus, F and Malik, A and Rateitschak, K and Sansom, O and Schafer, R and Schurrle, K and Sers, C and Schnell, S. and Harms, B and Shibata, D and Tyson, J and Vera, J and White, M and Zhivotovsky, B and Jaster, R and Wolkenhauer, O and Auffray, C and Baltrusch, S and Bluthgen, N and Byrne, H. M. and Cascante, M and Ciliberto, A and Dale, T (2010) Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research, 70 (1). pp. 12-13.

Schnell, S

Drasdo, D and Fell, D and Ferrell, J and Gallahan, D and Gatenby, R. A. and Guenther, U and Herzel, H. and Junghanss, C and Kunz, M and Laplace, F and van Leeuwen, I. M. M. and Lenormand, P and Levi, F and Linnebacher, M and Lowengrub, J and Maini, P. K. and Marcus, F and Malik, A and Rateitschak, K and Sansom, O and Schafer, R and Schurrle, K and Sers, C and Schnell, S. and Harms, B and Shibata, D and Tyson, J and Vera, J and White, M and Zhivotovsky, B and Jaster, R and Wolkenhauer, O and Auffray, C and Baltrusch, S and Bluthgen, N and Byrne, H. M. and Cascante, M and Ciliberto, A and Dale, T (2010) Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research, 70 (1). pp. 12-13.

Schurrle, K

Drasdo, D and Fell, D and Ferrell, J and Gallahan, D and Gatenby, R. A. and Guenther, U and Herzel, H. and Junghanss, C and Kunz, M and Laplace, F and van Leeuwen, I. M. M. and Lenormand, P and Levi, F and Linnebacher, M and Lowengrub, J and Maini, P. K. and Marcus, F and Malik, A and Rateitschak, K and Sansom, O and Schafer, R and Schurrle, K and Sers, C and Schnell, S. and Harms, B and Shibata, D and Tyson, J and Vera, J and White, M and Zhivotovsky, B and Jaster, R and Wolkenhauer, O and Auffray, C and Baltrusch, S and Bluthgen, N and Byrne, H. M. and Cascante, M and Ciliberto, A and Dale, T (2010) Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research, 70 (1). pp. 12-13.

Sekimura, T

Sekimura, T. and Madzvamuse, A. and Maini, P. K. (2007) Pigmentation pattern formation in butterfly wigns: Global patterns on fore- and hind-wing. In: Mathematical Modeling of Biological Systems. Modeling & Simulation in Science, Engineering and Technology, 1 (n/a). Birkhauser, Boston, pp. 141-148. ISBN n/a

Sers, C

Drasdo, D and Fell, D and Ferrell, J and Gallahan, D and Gatenby, R. A. and Guenther, U and Herzel, H. and Junghanss, C and Kunz, M and Laplace, F and van Leeuwen, I. M. M. and Lenormand, P and Levi, F and Linnebacher, M and Lowengrub, J and Maini, P. K. and Marcus, F and Malik, A and Rateitschak, K and Sansom, O and Schafer, R and Schurrle, K and Sers, C and Schnell, S. and Harms, B and Shibata, D and Tyson, J and Vera, J and White, M and Zhivotovsky, B and Jaster, R and Wolkenhauer, O and Auffray, C and Baltrusch, S and Bluthgen, N and Byrne, H. M. and Cascante, M and Ciliberto, A and Dale, T (2010) Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research, 70 (1). pp. 12-13.

Shakesheff, K

Green, J E F and Waters, S. L. and Shakesheff, K M and Byrne, H. M. (2009) A Mathematical Model of Liver Cell Aggregation In Vitro. Bulletin of Mathematical Biology .

Shibata, D

Drasdo, D and Fell, D and Ferrell, J and Gallahan, D and Gatenby, R. A. and Guenther, U and Herzel, H. and Junghanss, C and Kunz, M and Laplace, F and van Leeuwen, I. M. M. and Lenormand, P and Levi, F and Linnebacher, M and Lowengrub, J and Maini, P. K. and Marcus, F and Malik, A and Rateitschak, K and Sansom, O and Schafer, R and Schurrle, K and Sers, C and Schnell, S. and Harms, B and Shibata, D and Tyson, J and Vera, J and White, M and Zhivotovsky, B and Jaster, R and Wolkenhauer, O and Auffray, C and Baltrusch, S and Bluthgen, N and Byrne, H. M. and Cascante, M and Ciliberto, A and Dale, T (2010) Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research, 70 (1). pp. 12-13.

Shin, S

Murray, P J and Kang, J W and Mirams, G R and Shin, S Y and Byrne, H. M. and Maini, P. K. and Cho, K H (2010) Modelling spatially regulated B-catenin dynamics & invasion in intestinal crypts. Biophysical Journal , 99 (3). pp. 716-725.

Sotiris, A

Sotiris, A. and Prokopiou, S. A. and Byrne, H. M. and Jeffrey, M. R. and Robinson, R. S. and Mann, G. E. and Owen, M. R. (2013) Mathematical analysis of a model for the growth of the bovine corpus luteum. Journal of Mathematical Biology . (Submitted)

Stamper, I

Stamper, I. J. and Owen, M. R. and Maini, P. K. and Byrne, H. M. (2010) Oscillatory dynamics in a model of vascular tumour growth -- implications for chemotherapy. Biology Direct, 5 (27). pp. 1-17.

Stamper, I. J. and Byrne, H. M. and Maini, P. K. (2007) Modelling the role of angiogenesis and vasculogenesis in solid tumuour growth. Bulletin of Mathematical Biology, 69 (8). pp. 2737-2772. ISSN n/a

Tyson, J

Drasdo, D and Fell, D and Ferrell, J and Gallahan, D and Gatenby, R. A. and Guenther, U and Herzel, H. and Junghanss, C and Kunz, M and Laplace, F and van Leeuwen, I. M. M. and Lenormand, P and Levi, F and Linnebacher, M and Lowengrub, J and Maini, P. K. and Marcus, F and Malik, A and Rateitschak, K and Sansom, O and Schafer, R and Schurrle, K and Sers, C and Schnell, S. and Harms, B and Shibata, D and Tyson, J and Vera, J and White, M and Zhivotovsky, B and Jaster, R and Wolkenhauer, O and Auffray, C and Baltrusch, S and Bluthgen, N and Byrne, H. M. and Cascante, M and Ciliberto, A and Dale, T (2010) Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research, 70 (1). pp. 12-13.

Varma, S

van Leeuwen, I. M. M. and Mirams, G R and Walter, A and Fletcher, A G and Murray, P J and Osbourne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation, 42 (5). pp. 617-636.

Leeuwen, I M M and Mirams, G R and Walter, A and Fletcher, A and Murray, P J and Osborne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation .

Vera, J

Drasdo, D and Fell, D and Ferrell, J and Gallahan, D and Gatenby, R. A. and Guenther, U and Herzel, H. and Junghanss, C and Kunz, M and Laplace, F and van Leeuwen, I. M. M. and Lenormand, P and Levi, F and Linnebacher, M and Lowengrub, J and Maini, P. K. and Marcus, F and Malik, A and Rateitschak, K and Sansom, O and Schafer, R and Schurrle, K and Sers, C and Schnell, S. and Harms, B and Shibata, D and Tyson, J and Vera, J and White, M and Zhivotovsky, B and Jaster, R and Wolkenhauer, O and Auffray, C and Baltrusch, S and Bluthgen, N and Byrne, H. M. and Cascante, M and Ciliberto, A and Dale, T (2010) Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research, 70 (1). pp. 12-13.

Voß, U

Muraro, D. and Voß, U. and Wilson, M. and Bennett, M. and Byrne, H. M. and de Smet, I. and Hodgman, C. and King, J. R. (2012) Inference of the genetic network regulating lateral root initiation in Arabidopsis thaliana. Transactions on Computational Biology and Bioinformatics . (Submitted)

Wake, G

Wake, G. C. and Byrne, H. M. (2012) Calculus from the past: multiple delay systems arising in cancer cell modelling. ANZIAM Journal . (Submitted)

Walter, A

Osborne, J and Walter, A and Kershaw, S. K. and Mirams, G R and Fletcher, A G and Pathmanathan, P. and Gavaghan, D. J. and Jensen, O E and Maini, P. K. and Byrne, H. M. (2010) A hybrid approach to multi-scale modelling of cancer. Philosophical Transactions of the Royal Society A, 368 (1930). pp. 5013-5028. ISSN 0962-8428

Pitt-Francis, J and Pathmanathan, P. and Bernabeu, M O and Bordas, R and Cooper, J and Fletcher, A G and Mirams, G R and Murray, P J and Osbourne, J and Walter, A and Chapman, S. J. and Garny, A. and van Leeuwen, I. M. M. and Maini, P. K. and Rodriguez, B and Waters, S. L. and Whiteley, J. P. and Byrne, H. M. and Gavaghan, D. J. (2009) Chaste: a test-driven approach to software development for biological modelling. Computer Physics Communications, 180 (12). pp. 2452-2471.

Pitt-Francis, J and Pathmanathan, P. and Bernabeu, M O and Bordas, R and Cooper, J and Fletcher, A G and Mirams, G R and Murray, P J and Osbourne, J and Walter, A and Chapman, S. J. and Garny, A. and van Leeuwen, I. M. M. and Maini, P. K. and Rodriguez, B and Whiteley, J. P. and Byrne, H. M. and Gavaghan, D. J. (2009) Chaste: a test-driven approach to software development for physiological modelling. Not specified . (Submitted)

van Leeuwen, I. M. M. and Mirams, G R and Walter, A and Fletcher, A G and Murray, P J and Osbourne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation, 42 (5). pp. 617-636.

Leeuwen, I M M and Mirams, G R and Walter, A and Fletcher, A and Murray, P J and Osborne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation .

Waters, S

O'Dea, R. D. and Osborne, J. M. and El Haj, A. J. and Byrne, H. M. and Waters, S. L. (2012) The interplay between tissue growth and scaffold degradation in engineered tissue constructs. Journal of Mathematical Biology . (Submitted)

Bell, C. G. and Byrne, H. M. and Whiteley, J. P. and Waters, S. L. (2012) A note on heat and mass transfer from a sphere in Stokes
flow at low Péclet number.
Applied Mathematics Letters . (Submitted)

Osborne, J. M. and O'Dea, R. D. and Whiteley, J. P. and Byrne, H. M. and Waters, S. L. (2010) The influence of bioreactor geometry and the mechanical
environment on engineered tissues.
ASME Journal of Biomechanical Engineering, 132 No. 5 (pp 51006).

Pitt-Francis, J and Pathmanathan, P. and Bernabeu, M O and Bordas, R and Cooper, J and Fletcher, A G and Mirams, G R and Murray, P J and Osbourne, J and Walter, A and Chapman, S. J. and Garny, A. and van Leeuwen, I. M. M. and Maini, P. K. and Rodriguez, B and Waters, S. L. and Whiteley, J. P. and Byrne, H. M. and Gavaghan, D. J. (2009) Chaste: a test-driven approach to software development for biological modelling. Computer Physics Communications, 180 (12). pp. 2452-2471.

van Leeuwen, I. M. M. and Mirams, G R and Walter, A and Fletcher, A G and Murray, P J and Osbourne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation, 42 (5). pp. 617-636.

Leeuwen, I M M and Mirams, G R and Walter, A and Fletcher, A and Murray, P J and Osborne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation .

Green, J E F and Waters, S. L. and Shakesheff, K M and Byrne, H. M. (2009) A Mathematical Model of Liver Cell Aggregation In Vitro. Bulletin of Mathematical Biology .

O'Dea, R. D. and Waters, S. L. and Byrne, H. M. (2008) A two-fluid model for tissue growth within
a dynamic flow environment.
Euro. Jnl of Applied Mathematics .

Webb, S

Byrne, H. M. and Alarcon, T. and Owen, M. R. and Webb, S. D. and Maini, P. K. (2006) Modelling aspects of cancer dynamics: a review. Philosophical Transactions of the Royal Society A, 364 (1843). pp. 1563-1578.

White, M

Drasdo, D and Fell, D and Ferrell, J and Gallahan, D and Gatenby, R. A. and Guenther, U and Herzel, H. and Junghanss, C and Kunz, M and Laplace, F and van Leeuwen, I. M. M. and Lenormand, P and Levi, F and Linnebacher, M and Lowengrub, J and Maini, P. K. and Marcus, F and Malik, A and Rateitschak, K and Sansom, O and Schafer, R and Schurrle, K and Sers, C and Schnell, S. and Harms, B and Shibata, D and Tyson, J and Vera, J and White, M and Zhivotovsky, B and Jaster, R and Wolkenhauer, O and Auffray, C and Baltrusch, S and Bluthgen, N and Byrne, H. M. and Cascante, M and Ciliberto, A and Dale, T (2010) Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research, 70 (1). pp. 12-13.

Whiteley, J

Bell, C. G. and Byrne, H. M. and Whiteley, J. P. and Waters, S. L. (2012) A note on heat and mass transfer from a sphere in Stokes
flow at low Péclet number.
Applied Mathematics Letters . (Submitted)

Osborne, J. M. and O'Dea, R. D. and Whiteley, J. P. and Byrne, H. M. and Waters, S. L. (2010) The influence of bioreactor geometry and the mechanical
environment on engineered tissues.
ASME Journal of Biomechanical Engineering, 132 No. 5 (pp 51006).

Pitt-Francis, J and Pathmanathan, P. and Bernabeu, M O and Bordas, R and Cooper, J and Fletcher, A G and Mirams, G R and Murray, P J and Osbourne, J and Walter, A and Chapman, S. J. and Garny, A. and van Leeuwen, I. M. M. and Maini, P. K. and Rodriguez, B and Waters, S. L. and Whiteley, J. P. and Byrne, H. M. and Gavaghan, D. J. (2009) Chaste: a test-driven approach to software development for biological modelling. Computer Physics Communications, 180 (12). pp. 2452-2471.

Pitt-Francis, J and Pathmanathan, P. and Bernabeu, M O and Bordas, R and Cooper, J and Fletcher, A G and Mirams, G R and Murray, P J and Osbourne, J and Walter, A and Chapman, S. J. and Garny, A. and van Leeuwen, I. M. M. and Maini, P. K. and Rodriguez, B and Whiteley, J. P. and Byrne, H. M. and Gavaghan, D. J. (2009) Chaste: a test-driven approach to software development for physiological modelling. Not specified . (Submitted)

van Leeuwen, I. M. M. and Mirams, G R and Walter, A and Fletcher, A G and Murray, P J and Osbourne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation, 42 (5). pp. 617-636.

Leeuwen, I M M and Mirams, G R and Walter, A and Fletcher, A and Murray, P J and Osborne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation .

Wilson, M

Muraro, D. and Voß, U. and Wilson, M. and Bennett, M. and Byrne, H. M. and de Smet, I. and Hodgman, C. and King, J. R. (2012) Inference of the genetic network regulating lateral root initiation in Arabidopsis thaliana. Transactions on Computational Biology and Bioinformatics . (Submitted)

Wolkenhauer, O

Drasdo, D and Fell, D and Ferrell, J and Gallahan, D and Gatenby, R. A. and Guenther, U and Herzel, H. and Junghanss, C and Kunz, M and Laplace, F and van Leeuwen, I. M. M. and Lenormand, P and Levi, F and Linnebacher, M and Lowengrub, J and Maini, P. K. and Marcus, F and Malik, A and Rateitschak, K and Sansom, O and Schafer, R and Schurrle, K and Sers, C and Schnell, S. and Harms, B and Shibata, D and Tyson, J and Vera, J and White, M and Zhivotovsky, B and Jaster, R and Wolkenhauer, O and Auffray, C and Baltrusch, S and Bluthgen, N and Byrne, H. M. and Cascante, M and Ciliberto, A and Dale, T (2010) Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research, 70 (1). pp. 12-13.

Young, S

van Leeuwen, I. M. M. and Mirams, G R and Walter, A and Fletcher, A G and Murray, P J and Osbourne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation, 42 (5). pp. 617-636.

Leeuwen, I M M and Mirams, G R and Walter, A and Fletcher, A and Murray, P J and Osborne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation .

Yu, G

Lovrics, A. and Yu, G. and Juhász, B. and Bock, I. and Byrne, H. M. and Dinnyés, A. and Kovács, K. A. (2012) Boolean modelling reveals new regulatory connections between transcription factors orchestrating the development of the ventral spinal cord. Journal of the Royal Society Interface . (Submitted)

Zhivotovsky, B

Drasdo, D and Fell, D and Ferrell, J and Gallahan, D and Gatenby, R. A. and Guenther, U and Herzel, H. and Junghanss, C and Kunz, M and Laplace, F and van Leeuwen, I. M. M. and Lenormand, P and Levi, F and Linnebacher, M and Lowengrub, J and Maini, P. K. and Marcus, F and Malik, A and Rateitschak, K and Sansom, O and Schafer, R and Schurrle, K and Sers, C and Schnell, S. and Harms, B and Shibata, D and Tyson, J and Vera, J and White, M and Zhivotovsky, B and Jaster, R and Wolkenhauer, O and Auffray, C and Baltrusch, S and Bluthgen, N and Byrne, H. M. and Cascante, M and Ciliberto, A and Dale, T (2010) Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research, 70 (1). pp. 12-13.

de Smet, I

Muraro, D. and Voß, U. and Wilson, M. and Bennett, M. and Byrne, H. M. and de Smet, I. and Hodgman, C. and King, J. R. (2012) Inference of the genetic network regulating lateral root initiation in Arabidopsis thaliana. Transactions on Computational Biology and Bioinformatics . (Submitted)

van Leeuwen, I

Drasdo, D and Fell, D and Ferrell, J and Gallahan, D and Gatenby, R. A. and Guenther, U and Herzel, H. and Junghanss, C and Kunz, M and Laplace, F and van Leeuwen, I. M. M. and Lenormand, P and Levi, F and Linnebacher, M and Lowengrub, J and Maini, P. K. and Marcus, F and Malik, A and Rateitschak, K and Sansom, O and Schafer, R and Schurrle, K and Sers, C and Schnell, S. and Harms, B and Shibata, D and Tyson, J and Vera, J and White, M and Zhivotovsky, B and Jaster, R and Wolkenhauer, O and Auffray, C and Baltrusch, S and Bluthgen, N and Byrne, H. M. and Cascante, M and Ciliberto, A and Dale, T (2010) Systems biologists seek fuller integration of systems biology approaches in new cancer research programs. Cancer Research, 70 (1). pp. 12-13.

Pitt-Francis, J and Pathmanathan, P. and Bernabeu, M O and Bordas, R and Cooper, J and Fletcher, A G and Mirams, G R and Murray, P J and Osbourne, J and Walter, A and Chapman, S. J. and Garny, A. and van Leeuwen, I. M. M. and Maini, P. K. and Rodriguez, B and Waters, S. L. and Whiteley, J. P. and Byrne, H. M. and Gavaghan, D. J. (2009) Chaste: a test-driven approach to software development for biological modelling. Computer Physics Communications, 180 (12). pp. 2452-2471.

Pitt-Francis, J and Pathmanathan, P. and Bernabeu, M O and Bordas, R and Cooper, J and Fletcher, A G and Mirams, G R and Murray, P J and Osbourne, J and Walter, A and Chapman, S. J. and Garny, A. and van Leeuwen, I. M. M. and Maini, P. K. and Rodriguez, B and Whiteley, J. P. and Byrne, H. M. and Gavaghan, D. J. (2009) Chaste: a test-driven approach to software development for physiological modelling. Not specified . (Submitted)

van Leeuwen, I. M. M. and Mirams, G R and Walter, A and Fletcher, A G and Murray, P J and Osbourne, J and Varma, S and Young, S J and Cooper, J and Doyle, B and Pitt-Francis, J and Momtahan, L and Pathmanathan, P. and Whiteley, J. P. and Chapman, S. J. and Gavaghan, D. J. and Jensen, O E and King, J. R. and Maini, P. K. and Waters, S. L. and Byrne, H. M. (2009) An integrative computational model for intestinal tissue renewal. Cell Proliferation, 42 (5). pp. 617-636.

van Leeuwen, I. M. M. and Byrne, H. M. and Johnston, M. D. and Edwards, C. M. and Chapman, S. J. and Bodmer, W. F. and Maini, P. K. (2008) Modelling multiscale aspects of colorectal cancer. AIP Conference Proceedings, 971 (1). pp. 3-7.

Byrne, H. M. and van Leeuwen, I. M. M. and Owen, M. R. and Alarcon, T. and Maini, P. K. (2008) Multiscale modelling of solid tumour growth. In: Selected Topics in Cancer Modeling. Genesis, Evolution, Immune Competition, & Therapy, n/a (n/a). Birkhauser, Boston, USA, pp. 449-473. ISBN 978-0-8176-4712-4

This list was generated on Thu Nov 27 06:36:19 2014 GMT.