The Mathematical Institute, University of Oxford, Eprints Archive

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Number of items: 38.

Article

Markham, D C and Simpson, M J and Maini, P. K. and Gaffney, E. A. and Baker, R. E. (2014) Comparing methods for modelling spreading cell fronts. Journal of Theoretical Biology, 353 (1). pp. 95-103.

Woolley, T E and Baker, R. E. and Tickle, C and Maini, P. K. and Towers, M (2014) Mathematical modelling of digit specification by a sonic hedgehog gradient. Developmental Dynamics, 243 (2). pp. 290-298.

Bowden, L and Simpson, M J and Baker, R. E. (2013) Design and interpretation of cell trajectory assays. Journal of the Royal Society Interface, 10 (88). pp. 1742-1755.

Rosser, G and Fletcher, A G and Maini, P. K. and Baker, R. E. (2013) The effect of sampling rate on observed statistics in a correlated random walk. The Journal of the Royal Society Interface, 10 (83). pp. 1742-5662.

Yates, C A and Baker, R. E. (2013) The importance of the Voronoi domain partition for position-jump reaction-diffusion processes on non-uniform rectilinear lattices. Physical Review E, 88 (5). 05471.

Markham, D C and Simpson, M J and Maini, P. K. and Gaffney, E. A. and Baker, R. E. (2013) Incorporating spatial correlations into multispecies mean-field models. Physical Review E, 88 . 052713-(9 pages).

Murray, P J and Maini, P. K. and Baker, R. E. (2013) Modelling delta-notch perturbations during zebrafish somitogenesis. Developmental Biology, 373 (2). pp. 407-421.

Vaughan, JR., B. and Baker, R. E. and Kay, D. and Maini, P. K. (2013) A modified Oster-Murray-Harris mechanical model of morphogenesis. Siam Journal of Applied Mathematics, 73 (6). pp. 2124-2142.

Rosser, G and Fletcher, A G and Wilkinson, D A and de Beyer, J A and Yates, C A and Armitage, J P and Maini, P. K. and Baker, R. E. (2013) Novel methods for analysing bacterial tracks reveal persistence in rhodobacter sphaeroides. PLOs Computational Biology, 9 (10). e1003276-(18 pages).

Collins-Hooper, H. and Woolley, T. E. and Dyson, L and Patel, A. and Potter, P. and Baker, R. E. and Gaffney, E. A. and Maini, P. K. and Dash, P. R. and Patel, K. (2012) Age related changes in speed and mechanism of adult skeletal
muscle stem cell migration.
Stem Cells .

Collins-Hooper, H. and Woolley, T. E. and Dyson, L and Patel, A. and Potter, P. and Baker, R. E. and Gaffney, E. A. and Maini, P. K. and Dash, P. R. and Patel, K. (2012) Age-related changes in speed & mechanism of adult skeletal muscle stem cell migration. Stem Cells, 30 (6). pp. 1182-1195.

Woolley, T. E. and Baker, R. E. and Gaffney, E. A. and Maini, P. K. and Seirin Lee, S (2012) Effects of intrinsic stochasticity on delayed reaction-diffusion patterning systems. Physical Review E, 85 (5). 051914-1-051914-14. ISSN 1539-3755

Yates, C. A. and Baker, R. E. and Erban, R. and Maini, P. K. (2012) Going from microscopic to macroscopic on nonuniform growing domains. Physical Review E, 86 (2). 021921-1-02921-20.

Smith, A M and Baker, R. E. and Kay, D. and Maini, P. K. (2012) Incorporating chemical signalling factors into cell-based models of growing epithelial tissues. Journal of Mathematical Biology, 65 (3). pp. 441-463.

Klika, V and Baker, R. E. and Headon, D and Gaffney, E. A. (2012) The influence of receptor-mediated interactions on reaction-diffusion mechanisms of cellular self-organisation. Bulletin of Mathematical Biology, 74 (4). pp. 935-957.

Dyson, L and Maini, P. K. and Baker, R. E. (2012) Macroscopic limits of individual-based models for motile cell populations with volume exclusion. Physical Review E, 86 (3). 031903-1-031903-5.

Shvartsman, S Y and Baker, R. E. (2012) Mathematical models of morphogen gradients and their effects on gene expression. Wires Developmental Biology .

Thompson, R and Yates, C. A. and Baker, R. E. (2012) Modelling cell migration and adhesion during development. Bulletin of Mathematical Biology, 74 (12). pp. 2793-2809.

Murray, P J and Maini, P. K. and Plikus, M. V. and Chuong, C. M. and Baker, R. E. (2012) Modelling hair follicle growth dynamics as an excitable medium. PLOs Computational Biology, 8 (12). e1002804-(19 pages).

Baker, R. E. and Simpson, M J (2012) Models of collective cell motion for cell populations with different aspect ratio: diffusion, proliferation & travelling waves. Physica A, 391 (14). pp. 3729-3750.

Trichas, G and Smith, A M and White, N and Wilkins, V and Watanabe, T and Moore, A and Joyce, B and Sugnaseelan, J and Rodriguez, T A and Kay, David and Baker, R. E. and Maini, P. K. and Srinivas, S (2012) Multi-cellular Rosettes in the mouse visceral endoderm facilitate the ordered migration of anterior visceral endoderm cells. PLos Biology, 10 (2). pp. 1-14.

McLennan, R and Dyson, L and Prather, K W and Morrison, J A and Baker, R. E. and Maini, P. K. and Kulesa, P. M. (2012) Multiscale mechanisms of cell migration during development: theory and experiment. Development, 139 (16). pp. 2935-2944.

Aragón, J. L. and Barrio, R. A. and Woolley, T. E. and Baker, R. E. and Maini, P. K. (2012) Non-linear effects on Turing patterns: time oscillations and chaos. Physical Review Letters . (Submitted)

Aragón, J. L. and Barrio, R. A. and Woolley, T. E. and Baker, R. E. and Maini, P. K. (2012) Nonlinear effects on Turing patterns: time oscillations and chaos. Physical Review E, 86 (2). 026201-1. ISSN 1063-651X

Maini, P. K. and Woolley, T. E. and Baker, R. E. and Gaffney, E. A. and Seirin Lee, S (2012) Turing's model for biological pattern formation and the robustness problem. Interface Focus, 2 (4). pp. 487-496.

Simpson, M J and Baker, R. E. (2011) Correcting mean-field approximations for spatially-dependent advection-diffusion-reaction processes. Physical Review E, 82 (4). 041905.

MacNamara, S and Baker, R. E. and Maini, P. K. (2011) Distinguishing graded & ultrasensitive signalling cascade kinetics by the shape of morphogen gradients in Drosophila. Journal of Theoretical Biology, 285 (1). pp. 136-146.

Cho, S W and Kwak, S W and Woolley, T. E. and Lee, M J and Kim, E J and Baker, R. E. and Kim, H J and Shin, J S and Tickle, C and Maini, P. K. and Jung, H S (2011) Interactions between Shh, Sostdc1 and Wnt signaling and a new feedback loop for spatial patterning of the teeth. Development , 138 (9). pp. 1807-1816.

Simpson, M J and Baker, R. E. and McCue, S. W. (2011) Models of collective cell spreading with variable cell aspect ration: a motivation for degenerate diffusion models. Physical Review E, 83 (2). 021901. ISSN 1063-651X

Woolley, T. E. and Baker, R. E. and Gaffney, E. A. and Maini, P. K. (2011) Power spectra methods for a stochastic description of diffusion on deterministically growing domains. Physical Review E, 84 (2). 021915-1-021915-15. ISSN 1063-651X

Plikus, M. V. and Baker, R. E. and Chen, C C and Fare, C and de La Cruz, D. and Andl, T and Maini, P. K. (2011) Self-organizing & stochastic behaviors during the regeneration of hair stem cells. Science, 332 (6029). p. 586.

Woolley , T. E. and Baker, R. E. and Gaffney, E. A. and Maini, P. K. (2011) Stochastic reaction & diffusion on growing domains: understanding the breakdown of robust pattern formation. Physical Review E, 84 (4). 046216-1. ISSN 1063-651X

Woolley, T. E. and Baker, R. E. and Maini, P. K. and Aragón, J. L. and Barrio, R. A. (2010) Analysis of stationary droplets in a generic Turing reaction-diffusion system. Physical Review E, 82 (5). ISSN 1063-651X

Benazeraf, B and Francois, P and Baker, R. E. and Little, C D and Pourquie, O L (2010) A random cell motility gradient downstream of FGF controls elongation of amniote embryos. Nature, 466 (7303). pp. 248-252.

Yates, C. A. and Baker, R. E. and Erban, R. and Maini, P. K. (2010) Refining self-propelled particle models for collective behaviour,. Canadian Applied Mathematics Quarterly, 18 (3). pp. 299-350.

Murray, P J and Maini, P. K. and Baker, R. E. The clockfront and wavefront model revisited. Journal of Theoretical Biology, 283 (1). 227`-238.

Baker, R. E. and Simpson, M J Correcting mean-field approximations for birth-death-movement processes. Physical Review E, 82 (4). 041905. ISSN 1063-651X

Book Section

Murray, P J and Maini, P. K. and Baker, R. E. (2013) Modelling Oscillator synchronisation during vertebrate axis segmentation. In: Springer Proceedings in Mathematics. Pattern Formation in Morphogenesis, 15 . Springer-Verlag Berlin Heidelberg, Heidelberg, pp. 95-105. ISBN 978-3-642-20164-6

This list was generated on Thu Apr 24 20:23:44 2014 BST.