Lipkova, J. and Zygalakis, K. C. and Chapman, S. J. and Erban, R. (2010) Analysis of Brownian dynamics simulations of reversible biomolecular reactions. SIAM Journal on Applied Mathematics . ISSN 1095-712X (Submitted)
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Abstract
A class of Brownian dynamics algorithms for stochastic reaction-diffusion models which include reversible bimolecular reactions is presented and analyzed. The method is a generalization of the λ-rho model for irreversible bimolecular reactions which was introduced in [11]. The formulae relating the experimentally measurable quantities (reaction rate constants and diffusion constants) with the algorithm parameters are derived. The probability of geminate recombination is also investigated.
| Item Type: | Article |
|---|---|
| Subjects: | D - G > General |
| Research Groups: | Oxford Centre for Collaborative Applied Mathematics |
| ID Code: | 985 |
| Deposited By: | Peter Hudston |
| Deposited On: | 26 Oct 2010 10:27 |
| Last Modified: | 09 Feb 2012 16:01 |
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