Lipkova, J. and Zygalakis, K. C. and Chapman, S. J. and Erban, R. (2010) Analysis of Brownian dynamics simulations of reversible biomolecular reactions. SIAM Journal on Applied Mathematics . ISSN 1095-712X (Submitted)
A class of Brownian dynamics algorithms for stochastic reaction-diffusion models which include reversible bimolecular reactions is presented and analyzed. The method is a generalization of the λ-rho model for irreversible bimolecular reactions which was introduced in . The formulae relating the experimentally measurable quantities (reaction rate constants and diffusion constants) with the algorithm parameters are derived. The probability of geminate recombination is also investigated.
|Subjects:||D - G > General|
|Research Groups:||Oxford Centre for Collaborative Applied Mathematics|
|Deposited By:||Peter Hudston|
|Deposited On:||26 Oct 2010 09:27|
|Last Modified:||29 May 2015 18:40|
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